Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24016 | 5' | -50.7 | NC_005262.1 | + | 67 | 0.69 | 0.803742 |
Target: 5'- aGGCCGcggcucGCGAAGAAGUcGGCcgCGCcgCAc -3' miRNA: 3'- -CUGGC------UGCUUCUUUA-CCGuaGCGa-GU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 8272 | 0.72 | 0.664566 |
Target: 5'- cGGCCGAgGAAGcugcccGCGUCGCUCGc -3' miRNA: 3'- -CUGGCUgCUUCuuuac-CGUAGCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 11010 | 0.68 | 0.850218 |
Target: 5'- cGGCUGACGAGcGAGGcGGCuGUCGCgCAa -3' miRNA: 3'- -CUGGCUGCUU-CUUUaCCG-UAGCGaGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 12529 | 0.66 | 0.924308 |
Target: 5'- -cUCGACGAGGAucGUGcgccGCAUCgGCUCGg -3' miRNA: 3'- cuGGCUGCUUCUu-UAC----CGUAG-CGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 12695 | 0.72 | 0.642012 |
Target: 5'- --gCGGCGAGGGAG-GGCG-CGCUCAu -3' miRNA: 3'- cugGCUGCUUCUUUaCCGUaGCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 15700 | 0.69 | 0.826725 |
Target: 5'- aGACgGACGAGcagcgcuaugcgcucGAcGUGGCG-CGCUCAu -3' miRNA: 3'- -CUGgCUGCUU---------------CUuUACCGUaGCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 15934 | 0.67 | 0.911727 |
Target: 5'- aGAgCGAgGAGGAAGUGcuGCAcaCGCUCGg -3' miRNA: 3'- -CUgGCUgCUUCUUUAC--CGUa-GCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 18519 | 0.66 | 0.940998 |
Target: 5'- uGCCGACcagauGGAAA-GGCAagucgCGCUCAu -3' miRNA: 3'- cUGGCUGcu---UCUUUaCCGUa----GCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 20700 | 0.66 | 0.92959 |
Target: 5'- cGCCGAcuuCGAAGGcgcagcccaucacGGUcGCGUCGCUCGg -3' miRNA: 3'- cUGGCU---GCUUCU-------------UUAcCGUAGCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 22007 | 0.66 | 0.932423 |
Target: 5'- aACCGAauuaGGAGAAAUGGCAaaguaauuuuauucuUCGUgUCGu -3' miRNA: 3'- cUGGCUg---CUUCUUUACCGU---------------AGCG-AGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 22505 | 0.66 | 0.924308 |
Target: 5'- uGCCGGCGAGca---GGCggCGCUCGa -3' miRNA: 3'- cUGGCUGCUUcuuuaCCGuaGCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 26967 | 1.09 | 0.003287 |
Target: 5'- cGACCGACGAAGAAAUGGCAUCGCUCAc -3' miRNA: 3'- -CUGGCUGCUUCUUUACCGUAGCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 28755 | 0.69 | 0.841366 |
Target: 5'- uGACCG-UGAAG-AAUGGCAa-GCUCGg -3' miRNA: 3'- -CUGGCuGCUUCuUUACCGUagCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 29145 | 0.68 | 0.850218 |
Target: 5'- cAUCGACGAGGccGAGUGGCG-CGCg-- -3' miRNA: 3'- cUGGCUGCUUC--UUUACCGUaGCGagu -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 29871 | 0.71 | 0.720184 |
Target: 5'- uGACCGACGAGGAGcgcGCggCGCUUc -3' miRNA: 3'- -CUGGCUGCUUCUUuacCGuaGCGAGu -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 30927 | 0.66 | 0.940998 |
Target: 5'- -cCCGACGucGAcGAUGcGCGUCGC-CGa -3' miRNA: 3'- cuGGCUGCuuCU-UUAC-CGUAGCGaGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 31953 | 0.74 | 0.552235 |
Target: 5'- gGugUGGCGAcGAGcaaGGCAUCGCUCGc -3' miRNA: 3'- -CugGCUGCUuCUUua-CCGUAGCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 32514 | 0.68 | 0.867191 |
Target: 5'- uGCCGGCGAuGAaaccggcagcGAUGGCGg-GCUCGu -3' miRNA: 3'- cUGGCUGCUuCU----------UUACCGUagCGAGU- -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 32891 | 0.67 | 0.897994 |
Target: 5'- aGGCCGACGucGAacgcGAUGGCcggCGCg-- -3' miRNA: 3'- -CUGGCUGCuuCU----UUACCGua-GCGagu -5' |
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24016 | 5' | -50.7 | NC_005262.1 | + | 34231 | 0.67 | 0.889958 |
Target: 5'- cGGCCGGCGGguAGAcguagaaGAUGcGCGgugcgCGCUCGu -3' miRNA: 3'- -CUGGCUGCU--UCU-------UUAC-CGUa----GCGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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