miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24016 5' -50.7 NC_005262.1 + 46981 0.66 0.924308
Target:  5'- cGGCCugugGGCGAAGgcAUGGCG-CGCgacgCAg -3'
miRNA:   3'- -CUGG----CUGCUUCuuUACCGUaGCGa---GU- -5'
24016 5' -50.7 NC_005262.1 + 11010 0.68 0.850218
Target:  5'- cGGCUGACGAGcGAGGcGGCuGUCGCgCAa -3'
miRNA:   3'- -CUGGCUGCUU-CUUUaCCG-UAGCGaGU- -5'
24016 5' -50.7 NC_005262.1 + 29145 0.68 0.850218
Target:  5'- cAUCGACGAGGccGAGUGGCG-CGCg-- -3'
miRNA:   3'- cUGGCUGCUUC--UUUACCGUaGCGagu -5'
24016 5' -50.7 NC_005262.1 + 35366 0.68 0.875295
Target:  5'- cGACCGGCGGAaauaugcUGGCGcacgcggCGCUCAa -3'
miRNA:   3'- -CUGGCUGCUUcuuu---ACCGUa------GCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 57495 0.68 0.875295
Target:  5'- cGGCCGACGAGgcgccGAAGUucaGCGUCGCg-- -3'
miRNA:   3'- -CUGGCUGCUU-----CUUUAc--CGUAGCGagu -5'
24016 5' -50.7 NC_005262.1 + 49334 0.67 0.890702
Target:  5'- uGACCGACGAgcAGgcGcGcGCcgCGCUCGc -3'
miRNA:   3'- -CUGGCUGCU--UCuuUaC-CGuaGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 52708 0.67 0.905003
Target:  5'- cGGCCGACGccGGAcgaGGCcgCGCUg- -3'
miRNA:   3'- -CUGGCUGCuuCUUua-CCGuaGCGAgu -5'
24016 5' -50.7 NC_005262.1 + 15934 0.67 0.911727
Target:  5'- aGAgCGAgGAGGAAGUGcuGCAcaCGCUCGg -3'
miRNA:   3'- -CUgGCUgCUUCUUUAC--CGUa-GCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 47754 0.67 0.918163
Target:  5'- cGGCCG-CGgcGAAcccGGCAUCGCg-- -3'
miRNA:   3'- -CUGGCuGCuuCUUua-CCGUAGCGagu -5'
24016 5' -50.7 NC_005262.1 + 28755 0.69 0.841366
Target:  5'- uGACCG-UGAAG-AAUGGCAa-GCUCGg -3'
miRNA:   3'- -CUGGCuGCUUCuUUACCGUagCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 58915 0.69 0.832282
Target:  5'- aGGCCGGCGGcccGAccGAUGGCGcgCGCUUc -3'
miRNA:   3'- -CUGGCUGCUu--CU--UUACCGUa-GCGAGu -5'
24016 5' -50.7 NC_005262.1 + 15700 0.69 0.826725
Target:  5'- aGACgGACGAGcagcgcuaugcgcucGAcGUGGCG-CGCUCAu -3'
miRNA:   3'- -CUGgCUGCUU---------------CUuUACCGUaGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 31953 0.74 0.552235
Target:  5'- gGugUGGCGAcGAGcaaGGCAUCGCUCGc -3'
miRNA:   3'- -CugGCUGCUuCUUua-CCGUAGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 8272 0.72 0.664566
Target:  5'- cGGCCGAgGAAGcugcccGCGUCGCUCGc -3'
miRNA:   3'- -CUGGCUgCUUCuuuac-CGUAGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 56914 0.71 0.709195
Target:  5'- cGCCGGCG-AGAucaaGGCcgCGCUCGa -3'
miRNA:   3'- cUGGCUGCuUCUuua-CCGuaGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 29871 0.71 0.720184
Target:  5'- uGACCGACGAGGAGcgcGCggCGCUUc -3'
miRNA:   3'- -CUGGCUGCUUCUUuacCGuaGCGAGu -5'
24016 5' -50.7 NC_005262.1 + 34787 0.7 0.793835
Target:  5'- gGAUCGGUGAAGguGUGGCuUCGcCUCAa -3'
miRNA:   3'- -CUGGCUGCUUCuuUACCGuAGC-GAGU- -5'
24016 5' -50.7 NC_005262.1 + 67 0.69 0.803742
Target:  5'- aGGCCGcggcucGCGAAGAAGUcGGCcgCGCcgCAc -3'
miRNA:   3'- -CUGGC------UGCUUCUUUA-CCGuaGCGa-GU- -5'
24016 5' -50.7 NC_005262.1 + 55334 0.69 0.803742
Target:  5'- aGAUCGACGAguGGAAA--GCcgCGCUCGa -3'
miRNA:   3'- -CUGGCUGCU--UCUUUacCGuaGCGAGU- -5'
24016 5' -50.7 NC_005262.1 + 49589 0.69 0.813459
Target:  5'- aGGCCGAC-AAGAAu--GUGUCGCUCGg -3'
miRNA:   3'- -CUGGCUGcUUCUUuacCGUAGCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.