miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 3' -57.4 NC_005262.1 + 22671 0.74 0.216475
Target:  5'- -uUCAGGGCgCGGaccagugcGCAGaCGCGCCUCGa -3'
miRNA:   3'- uuAGUUCCG-GCU--------UGUCcGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 24447 0.67 0.548711
Target:  5'- --aCAGGGuuGcagguauCAGGCGCGCCg-- -3'
miRNA:   3'- uuaGUUCCggCuu-----GUCCGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 25215 0.66 0.580803
Target:  5'- --aUAGGGUCGGACAagcaGCGCGCCa-- -3'
miRNA:   3'- uuaGUUCCGGCUUGUc---CGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 25388 0.69 0.409064
Target:  5'- gGGUCGuaaaGCCGAGCuGGCGgGCCUUc -3'
miRNA:   3'- -UUAGUuc--CGGCUUGuCCGCgCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 25899 0.66 0.580803
Target:  5'- cGAUCGAuGCCGAGCA-GCGCGCa--- -3'
miRNA:   3'- -UUAGUUcCGGCUUGUcCGCGCGgagc -5'
24060 3' -57.4 NC_005262.1 + 27122 0.7 0.382091
Target:  5'- aGGUCGAuGGCgGGGCGGGC-UGCUUCGa -3'
miRNA:   3'- -UUAGUU-CCGgCUUGUCCGcGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 28424 0.74 0.228028
Target:  5'- -cUCGAGGUCGAAuCGGGcCGCGCCg-- -3'
miRNA:   3'- uuAGUUCCGGCUU-GUCC-GCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 29150 0.68 0.456551
Target:  5'- --aCGAGGCCG-AguGGCGCGCgaCc -3'
miRNA:   3'- uuaGUUCCGGCuUguCCGCGCGgaGc -5'
24060 3' -57.4 NC_005262.1 + 30275 0.76 0.148955
Target:  5'- --aCAAGGCCGAGCGGGCaaucgagcGCGCUgUCGa -3'
miRNA:   3'- uuaGUUCCGGCUUGUCCG--------CGCGG-AGC- -5'
24060 3' -57.4 NC_005262.1 + 32328 0.69 0.446814
Target:  5'- -uUCAuGGGCCGucagGCAGGCGUgaucGCCUaCGg -3'
miRNA:   3'- uuAGU-UCCGGCu---UGUCCGCG----CGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 32632 0.66 0.601334
Target:  5'- gAAUCAGGGuuGAGCcgcccgaAGGCG-GCC-CGu -3'
miRNA:   3'- -UUAGUUCCggCUUG-------UCCGCgCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 32893 0.68 0.463435
Target:  5'- ---uGAGGCCGAcgucgaacgcgaugGCcGGCGCGCCgcCGg -3'
miRNA:   3'- uuagUUCCGGCU--------------UGuCCGCGCGGa-GC- -5'
24060 3' -57.4 NC_005262.1 + 33650 0.75 0.19487
Target:  5'- --cCGAGGCUG-ACGaGCGCGCCUCGc -3'
miRNA:   3'- uuaGUUCCGGCuUGUcCGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 34737 0.75 0.179926
Target:  5'- aGGUCGA-GCCGAACAcGGUGCGCgUCGu -3'
miRNA:   3'- -UUAGUUcCGGCUUGU-CCGCGCGgAGC- -5'
24060 3' -57.4 NC_005262.1 + 35904 0.66 0.580803
Target:  5'- --aCGGGGCCGGcACAGuGuCGaugGCCUCGa -3'
miRNA:   3'- uuaGUUCCGGCU-UGUC-C-GCg--CGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 44142 0.69 0.446814
Target:  5'- cGUUccGGCCGGACGcGCGCGCgaUCGg -3'
miRNA:   3'- uUAGuuCCGGCUUGUcCGCGCGg-AGC- -5'
24060 3' -57.4 NC_005262.1 + 46384 1.06 0.001092
Target:  5'- cAAUCAAGGCCGAACAGGCGCGCCUCGu -3'
miRNA:   3'- -UUAGUUCCGGCUUGUCCGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 47144 0.67 0.570054
Target:  5'- -cUCAAGGUCGAcgcgaccgGCgAGGCGCGCaccacuuUCGu -3'
miRNA:   3'- uuAGUUCCGGCU--------UG-UCCGCGCGg------AGC- -5'
24060 3' -57.4 NC_005262.1 + 49208 0.67 0.517193
Target:  5'- --gCAugcuGGCCGA--GGGCG-GCCUCGg -3'
miRNA:   3'- uuaGUu---CCGGCUugUCCGCgCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 49318 0.74 0.202209
Target:  5'- -uUCAAGGCgcagggcaugaccgaCGAGCAGGCGCGCgccgcgCUCGc -3'
miRNA:   3'- uuAGUUCCG---------------GCUUGUCCGCGCG------GAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.