miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 3' -57.4 NC_005262.1 + 1025 0.66 0.591594
Target:  5'- cGAUCuuGAGGCCGuggcguucgacAAUAGGCGCGa-UCGg -3'
miRNA:   3'- -UUAG--UUCCGGC-----------UUGUCCGCGCggAGC- -5'
24060 3' -57.4 NC_005262.1 + 2904 0.7 0.39095
Target:  5'- --aCGAGGUCGAggcGCAGGUggaGCGCCUg- -3'
miRNA:   3'- uuaGUUCCGGCU---UGUCCG---CGCGGAgc -5'
24060 3' -57.4 NC_005262.1 + 5167 0.68 0.506846
Target:  5'- uGAUCGGugacGGCCGGcgucgcgggcGCGGGCGCgGCCggcgCGa -3'
miRNA:   3'- -UUAGUU----CCGGCU----------UGUCCGCG-CGGa---GC- -5'
24060 3' -57.4 NC_005262.1 + 5235 0.72 0.28657
Target:  5'- cGAUCAGcGcGCCGAGCAGGaucaGCGCCg-- -3'
miRNA:   3'- -UUAGUU-C-CGGCUUGUCCg---CGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 5897 0.68 0.476361
Target:  5'- cGUCGAuGUCGGGCGGGaGCGCCUUc -3'
miRNA:   3'- uUAGUUcCGGCUUGUCCgCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 10704 0.66 0.624132
Target:  5'- aGAUCGAGGCCGcGCGcacgcggccGGCGCuCC-CGc -3'
miRNA:   3'- -UUAGUUCCGGCuUGU---------CCGCGcGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 11499 0.66 0.591594
Target:  5'- -uUCGGcGGCCcGGCGcGGCGCgGCUUCGg -3'
miRNA:   3'- uuAGUU-CCGGcUUGU-CCGCG-CGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 11706 0.66 0.602418
Target:  5'- --cCGAGGCCGAGCugcugcuucAGGUguuGCGCaugCUCGg -3'
miRNA:   3'- uuaGUUCCGGCUUG---------UCCG---CGCG---GAGC- -5'
24060 3' -57.4 NC_005262.1 + 13828 0.67 0.558287
Target:  5'- --gCGAGGCUGAaugccugGCAcGGCGUGCCa-- -3'
miRNA:   3'- uuaGUUCCGGCU-------UGU-CCGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 16575 0.67 0.517193
Target:  5'- ---gGAuGCCGAGCAGGCGCGUgUg- -3'
miRNA:   3'- uuagUUcCGGCUUGUCCGCGCGgAgc -5'
24060 3' -57.4 NC_005262.1 + 16598 0.67 0.517193
Target:  5'- uGGUCGAGGCgGcgaAGCAGcCGCGUUUCGa -3'
miRNA:   3'- -UUAGUUCCGgC---UUGUCcGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 17061 0.68 0.465412
Target:  5'- cGUCGcgcgcacGGcGCCG-AUAGGCGCGCCcgUCGa -3'
miRNA:   3'- uUAGU-------UC-CGGCuUGUCCGCGCGG--AGC- -5'
24060 3' -57.4 NC_005262.1 + 17175 0.69 0.446814
Target:  5'- -cUCGcGGCCcgccgcgucGACGGGCGCGCCuaUCGg -3'
miRNA:   3'- uuAGUuCCGGc--------UUGUCCGCGCGG--AGC- -5'
24060 3' -57.4 NC_005262.1 + 17240 0.7 0.364779
Target:  5'- cGAUCAAcucGGCCGAGgAGaCGCGCCUg- -3'
miRNA:   3'- -UUAGUU---CCGGCUUgUCcGCGCGGAgc -5'
24060 3' -57.4 NC_005262.1 + 17356 0.74 0.228028
Target:  5'- uGUCGuAGGUgucgcgcagcuCGAACAGGCGCGUCUCc -3'
miRNA:   3'- uUAGU-UCCG-----------GCUUGUCCGCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 17592 0.71 0.32943
Target:  5'- cGUCAGGcuGCCGAucgacgcgucgcgcGCGGcGCGCGCUUCGu -3'
miRNA:   3'- uUAGUUC--CGGCU--------------UGUC-CGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 17779 0.67 0.517193
Target:  5'- -uUCGAGGCCGAGCGcaaaGCcaGCCUCa -3'
miRNA:   3'- uuAGUUCCGGCUUGUccg-CG--CGGAGc -5'
24060 3' -57.4 NC_005262.1 + 18722 0.66 0.635004
Target:  5'- cGUCAAGGCgCuccucAGCuucGGCGCGgCUCGg -3'
miRNA:   3'- uUAGUUCCG-Gc----UUGu--CCGCGCgGAGC- -5'
24060 3' -57.4 NC_005262.1 + 20816 0.69 0.406314
Target:  5'- gGGUCGAGcuGCCGAGCgacgcgaccgugauGGGCuGCGCCUuCGa -3'
miRNA:   3'- -UUAGUUC--CGGCUUG--------------UCCG-CGCGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 22512 0.67 0.559354
Target:  5'- --aCGGGGUugccggCGAGCAGGCG-GCgCUCGa -3'
miRNA:   3'- uuaGUUCCG------GCUUGUCCGCgCG-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.