miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 3' -57.4 NC_005262.1 + 46384 1.06 0.001092
Target:  5'- cAAUCAAGGCCGAACAGGCGCGCCUCGu -3'
miRNA:   3'- -UUAGUUCCGGCUUGUCCGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 30275 0.76 0.148955
Target:  5'- --aCAAGGCCGAGCGGGCaaucgagcGCGCUgUCGa -3'
miRNA:   3'- uuaGUUCCGGCUUGUCCG--------CGCGG-AGC- -5'
24060 3' -57.4 NC_005262.1 + 50366 0.75 0.179926
Target:  5'- cGUCAcgggcucGGCCGGcGCGGGCGCGcCCUCGu -3'
miRNA:   3'- uUAGUu------CCGGCU-UGUCCGCGC-GGAGC- -5'
24060 3' -57.4 NC_005262.1 + 34737 0.75 0.179926
Target:  5'- aGGUCGA-GCCGAACAcGGUGCGCgUCGu -3'
miRNA:   3'- -UUAGUUcCGGCUUGU-CCGCGCGgAGC- -5'
24060 3' -57.4 NC_005262.1 + 33650 0.75 0.19487
Target:  5'- --cCGAGGCUG-ACGaGCGCGCCUCGc -3'
miRNA:   3'- uuaGUUCCGGCuUGUcCGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 49318 0.74 0.202209
Target:  5'- -uUCAAGGCgcagggcaugaccgaCGAGCAGGCGCGCgccgcgCUCGc -3'
miRNA:   3'- uuAGUUCCG---------------GCUUGUCCGCGCG------GAGC- -5'
24060 3' -57.4 NC_005262.1 + 22671 0.74 0.216475
Target:  5'- -uUCAGGGCgCGGaccagugcGCAGaCGCGCCUCGa -3'
miRNA:   3'- uuAGUUCCG-GCU--------UGUCcGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 28424 0.74 0.228028
Target:  5'- -cUCGAGGUCGAAuCGGGcCGCGCCg-- -3'
miRNA:   3'- uuAGUUCCGGCUU-GUCC-GCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 17356 0.74 0.228028
Target:  5'- uGUCGuAGGUgucgcgcagcuCGAACAGGCGCGUCUCc -3'
miRNA:   3'- uUAGU-UCCG-----------GCUUGUCCGCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 58194 0.73 0.258541
Target:  5'- ---gAGGGCCGGagcggagGCAGGUGCGCUUUGc -3'
miRNA:   3'- uuagUUCCGGCU-------UGUCCGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 52246 0.72 0.28657
Target:  5'- cGUCGAGGCCgGggUAGuuGCGCGCCg-- -3'
miRNA:   3'- uUAGUUCCGG-CuuGUC--CGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 5235 0.72 0.28657
Target:  5'- cGAUCAGcGcGCCGAGCAGGaucaGCGCCg-- -3'
miRNA:   3'- -UUAGUU-C-CGGCUUGUCCg---CGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 17592 0.71 0.32943
Target:  5'- cGUCAGGcuGCCGAucgacgcgucgcgcGCGGcGCGCGCUUCGu -3'
miRNA:   3'- uUAGUUC--CGGCU--------------UGUC-CGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 17240 0.7 0.364779
Target:  5'- cGAUCAAcucGGCCGAGgAGaCGCGCCUg- -3'
miRNA:   3'- -UUAGUU---CCGGCUUgUCcGCGCGGAgc -5'
24060 3' -57.4 NC_005262.1 + 49888 0.7 0.369916
Target:  5'- cGAUC-GGGCCGGACGgugcaggggcguccGGCGCggcagcggccggaGCCUCGg -3'
miRNA:   3'- -UUAGuUCCGGCUUGU--------------CCGCG-------------CGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 27122 0.7 0.382091
Target:  5'- aGGUCGAuGGCgGGGCGGGC-UGCUUCGa -3'
miRNA:   3'- -UUAGUU-CCGgCUUGUCCGcGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 2904 0.7 0.39095
Target:  5'- --aCGAGGUCGAggcGCAGGUggaGCGCCUg- -3'
miRNA:   3'- uuaGUUCCGGCU---UGUCCG---CGCGGAgc -5'
24060 3' -57.4 NC_005262.1 + 51950 0.7 0.399941
Target:  5'- aGGUgGAGGCCGcuCGcGCGCGCCUgCGc -3'
miRNA:   3'- -UUAgUUCCGGCuuGUcCGCGCGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 20816 0.69 0.406314
Target:  5'- gGGUCGAGcuGCCGAGCgacgcgaccgugauGGGCuGCGCCUuCGa -3'
miRNA:   3'- -UUAGUUC--CGGCUUG--------------UCCG-CGCGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 25388 0.69 0.409064
Target:  5'- gGGUCGuaaaGCCGAGCuGGCGgGCCUUc -3'
miRNA:   3'- -UUAGUuc--CGGCUUGuCCGCgCGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.