miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 3' -57.4 NC_005262.1 + 17779 0.67 0.517193
Target:  5'- -uUCGAGGCCGAGCGcaaaGCcaGCCUCa -3'
miRNA:   3'- uuAGUUCCGGCUUGUccg-CG--CGGAGc -5'
24060 3' -57.4 NC_005262.1 + 54270 0.68 0.453618
Target:  5'- --aCAAGGgCGugcucgaccucgacGACGuGGCGCGCCUCu -3'
miRNA:   3'- uuaGUUCCgGC--------------UUGU-CCGCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 29150 0.68 0.456551
Target:  5'- --aCGAGGCCG-AguGGCGCGCgaCc -3'
miRNA:   3'- uuaGUUCCGGCuUguCCGCGCGgaGc -5'
24060 3' -57.4 NC_005262.1 + 17061 0.68 0.465412
Target:  5'- cGUCGcgcgcacGGcGCCG-AUAGGCGCGCCcgUCGa -3'
miRNA:   3'- uUAGU-------UC-CGGCuUGUCCGCGCGG--AGC- -5'
24060 3' -57.4 NC_005262.1 + 5897 0.68 0.476361
Target:  5'- cGUCGAuGUCGGGCGGGaGCGCCUUc -3'
miRNA:   3'- uUAGUUcCGGCUUGUCCgCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 58599 0.68 0.486425
Target:  5'- ----uGGGCUGAu--GGgGCGCCUCGa -3'
miRNA:   3'- uuaguUCCGGCUuguCCgCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 5167 0.68 0.506846
Target:  5'- uGAUCGGugacGGCCGGcgucgcgggcGCGGGCGCgGCCggcgCGa -3'
miRNA:   3'- -UUAGUU----CCGGCU----------UGUCCGCG-CGGa---GC- -5'
24060 3' -57.4 NC_005262.1 + 16575 0.67 0.517193
Target:  5'- ---gGAuGCCGAGCAGGCGCGUgUg- -3'
miRNA:   3'- uuagUUcCGGCUUGUCCGCGCGgAgc -5'
24060 3' -57.4 NC_005262.1 + 16598 0.67 0.517193
Target:  5'- uGGUCGAGGCgGcgaAGCAGcCGCGUUUCGa -3'
miRNA:   3'- -UUAGUUCCGgC---UUGUCcGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 44142 0.69 0.446814
Target:  5'- cGUUccGGCCGGACGcGCGCGCgaUCGg -3'
miRNA:   3'- uUAGuuCCGGCUUGUcCGCGCGg-AGC- -5'
24060 3' -57.4 NC_005262.1 + 32328 0.69 0.446814
Target:  5'- -uUCAuGGGCCGucagGCAGGCGUgaucGCCUaCGg -3'
miRNA:   3'- uuAGU-UCCGGCu---UGUCCGCG----CGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 50870 0.69 0.445847
Target:  5'- --gCAGGuGCCGAcgcaaucGCAcGGCGCGCCgUCa -3'
miRNA:   3'- uuaGUUC-CGGCU-------UGU-CCGCGCGG-AGc -5'
24060 3' -57.4 NC_005262.1 + 30275 0.76 0.148955
Target:  5'- --aCAAGGCCGAGCGGGCaaucgagcGCGCUgUCGa -3'
miRNA:   3'- uuaGUUCCGGCUUGUCCG--------CGCGG-AGC- -5'
24060 3' -57.4 NC_005262.1 + 34737 0.75 0.179926
Target:  5'- aGGUCGA-GCCGAACAcGGUGCGCgUCGu -3'
miRNA:   3'- -UUAGUUcCGGCUUGU-CCGCGCGgAGC- -5'
24060 3' -57.4 NC_005262.1 + 33650 0.75 0.19487
Target:  5'- --cCGAGGCUG-ACGaGCGCGCCUCGc -3'
miRNA:   3'- uuaGUUCCGGCuUGUcCGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 49318 0.74 0.202209
Target:  5'- -uUCAAGGCgcagggcaugaccgaCGAGCAGGCGCGCgccgcgCUCGc -3'
miRNA:   3'- uuAGUUCCG---------------GCUUGUCCGCGCG------GAGC- -5'
24060 3' -57.4 NC_005262.1 + 22671 0.74 0.216475
Target:  5'- -uUCAGGGCgCGGaccagugcGCAGaCGCGCCUCGa -3'
miRNA:   3'- uuAGUUCCG-GCU--------UGUCcGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 28424 0.74 0.228028
Target:  5'- -cUCGAGGUCGAAuCGGGcCGCGCCg-- -3'
miRNA:   3'- uuAGUUCCGGCUU-GUCC-GCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 17240 0.7 0.364779
Target:  5'- cGAUCAAcucGGCCGAGgAGaCGCGCCUg- -3'
miRNA:   3'- -UUAGUU---CCGGCUUgUCcGCGCGGAgc -5'
24060 3' -57.4 NC_005262.1 + 51950 0.7 0.399941
Target:  5'- aGGUgGAGGCCGcuCGcGCGCGCCUgCGc -3'
miRNA:   3'- -UUAgUUCCGGCuuGUcCGCGCGGA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.