miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 5' -65.1 NC_005262.1 + 35344 0.66 0.284451
Target:  5'- uCGUGccGUUCGCcgGGGGcGCCCaGCCGCu -3'
miRNA:   3'- -GCGUucCGAGCG--UCCC-CGGG-CGGCGc -5'
24060 5' -65.1 NC_005262.1 + 12748 0.69 0.18356
Target:  5'- gCGCAGGGUUCGCc---GCgCGCCGCGc -3'
miRNA:   3'- -GCGUUCCGAGCGucccCGgGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 46644 0.68 0.213107
Target:  5'- uCGUcguGGGCgUCGCGGGagcggcGGCCggCGCCGCGc -3'
miRNA:   3'- -GCGu--UCCG-AGCGUCC------CCGG--GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 49895 0.68 0.228803
Target:  5'- gCGCGgccgaucGGGCcggacggUGCAGGGGCguCCGgCGCGg -3'
miRNA:   3'- -GCGU-------UCCGa------GCGUCCCCG--GGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 59277 0.67 0.24665
Target:  5'- uCGCAAGGCgcuccauCAGcGGGCCCGUgagcugcuucuuCGCGu -3'
miRNA:   3'- -GCGUUCCGagc----GUC-CCCGGGCG------------GCGC- -5'
24060 5' -65.1 NC_005262.1 + 17189 0.67 0.258766
Target:  5'- gCGCGGuGGaccucCUCGC---GGCCCGCCGCGu -3'
miRNA:   3'- -GCGUU-CC-----GAGCGuccCCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 46521 0.72 0.101398
Target:  5'- gCGC-GGGCggCGCGGcGGGCCC-CUGCGg -3'
miRNA:   3'- -GCGuUCCGa-GCGUC-CCCGGGcGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 56442 0.72 0.109726
Target:  5'- aCGCGAucuGCUCGC-GGGGCaCGCCGCc -3'
miRNA:   3'- -GCGUUc--CGAGCGuCCCCGgGCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 5543 0.69 0.179002
Target:  5'- gGCGAGGUUCGCcGcGaGGUCaUGCCGCGc -3'
miRNA:   3'- gCGUUCCGAGCGuC-C-CCGG-GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 24873 0.68 0.202326
Target:  5'- uCGCGaugucgaAGuGCUCGCcc-GGCUCGCCGCGg -3'
miRNA:   3'- -GCGU-------UC-CGAGCGuccCCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 11519 0.67 0.235007
Target:  5'- gGCGcGGCgugucgCGCAccuucGGcGGCCCGgCGCGg -3'
miRNA:   3'- gCGUuCCGa-----GCGU-----CC-CCGGGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 48142 0.66 0.277846
Target:  5'- gGCAGGugcgaccgacgcGCUUGCGGGcgcGGCCgGCUGCu -3'
miRNA:   3'- gCGUUC------------CGAGCGUCC---CCGGgCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 24926 0.71 0.135163
Target:  5'- gCGCAGGGUgaUCgGCAcGGcGCCgGCCGCGa -3'
miRNA:   3'- -GCGUUCCG--AG-CGUcCC-CGGgCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 48169 0.66 0.271364
Target:  5'- gCGCGucGGCgC-CGGGcGGCUCGUCGCGg -3'
miRNA:   3'- -GCGUu-CCGaGcGUCC-CCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 31724 0.68 0.207913
Target:  5'- aCGC-GGGCaUCGCcguAGGucGGCuuGCCGCGc -3'
miRNA:   3'- -GCGuUCCG-AGCG---UCC--CCGggCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 4406 0.71 0.12734
Target:  5'- cCGCGAGGCUCGCcguagucgacgaugAGGGGCgCGUgauugagGCGg -3'
miRNA:   3'- -GCGUUCCGAGCG--------------UCCCCGgGCGg------CGC- -5'
24060 5' -65.1 NC_005262.1 + 51281 0.74 0.084227
Target:  5'- cCGCGcGGCUC-CAGcGGG-CCGCCGCGu -3'
miRNA:   3'- -GCGUuCCGAGcGUC-CCCgGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 15047 0.66 0.271364
Target:  5'- --gGGGGUUCGCcgucuuuuccgaAGGGGUUCGCgGCGu -3'
miRNA:   3'- gcgUUCCGAGCG------------UCCCCGGGCGgCGC- -5'
24060 5' -65.1 NC_005262.1 + 1261 0.66 0.298031
Target:  5'- uCGCAcuGGGCUuccgCGCAGGauggcaaGCCCG-CGCGg -3'
miRNA:   3'- -GCGU--UCCGA----GCGUCCc------CGGGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 17203 0.67 0.250836
Target:  5'- aGCAAGGC-CGUuaucaccgaggaaaAGcGGCUCGUCGCGa -3'
miRNA:   3'- gCGUUCCGaGCG--------------UCcCCGGGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.