miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24064 5' -52.6 NC_005262.1 + 47862 1.06 0.003192
Target:  5'- uAGAAUCGAACCACUGCGCCGAUCGAUa -3'
miRNA:   3'- -UCUUAGCUUGGUGACGCGGCUAGCUA- -5'
24064 5' -52.6 NC_005262.1 + 23178 0.89 0.047925
Target:  5'- cAGGAUCGAACCGCUGCGUCGAUCc-- -3'
miRNA:   3'- -UCUUAGCUUGGUGACGCGGCUAGcua -5'
24064 5' -52.6 NC_005262.1 + 50071 0.8 0.195323
Target:  5'- cGGAGaCGAagGCCGCUGCGCCGAcCGAa -3'
miRNA:   3'- -UCUUaGCU--UGGUGACGCGGCUaGCUa -5'
24064 5' -52.6 NC_005262.1 + 39819 0.73 0.487298
Target:  5'- uGGggUUGAugCGCUGCGCCugcuGcgCGAUc -3'
miRNA:   3'- -UCuuAGCUugGUGACGCGG----CuaGCUA- -5'
24064 5' -52.6 NC_005262.1 + 37674 0.72 0.518933
Target:  5'- gAGGcgGUCGAACCAUUGaCGCUGGuaUCGAa -3'
miRNA:   3'- -UCU--UAGCUUGGUGAC-GCGGCU--AGCUa -5'
24064 5' -52.6 NC_005262.1 + 33321 0.71 0.583244
Target:  5'- cGAGUCGGACgcaacugcguCGCUGCgcggcaccgugccGCCGAUCGAc -3'
miRNA:   3'- uCUUAGCUUG----------GUGACG-------------CGGCUAGCUa -5'
24064 5' -52.6 NC_005262.1 + 31358 0.71 0.595446
Target:  5'- uGGccgCGGACgACUGCggcuGCCGAUCGAUg -3'
miRNA:   3'- -UCuuaGCUUGgUGACG----CGGCUAGCUA- -5'
24064 5' -52.6 NC_005262.1 + 27429 0.71 0.595446
Target:  5'- --cGUCGAgauucuugACCAC-GUGCCGAUCGAUc -3'
miRNA:   3'- ucuUAGCU--------UGGUGaCGCGGCUAGCUA- -5'
24064 5' -52.6 NC_005262.1 + 46745 0.7 0.628885
Target:  5'- cGGAUCGAucGCCGCcaCGCCGGUCGu- -3'
miRNA:   3'- uCUUAGCU--UGGUGacGCGGCUAGCua -5'
24064 5' -52.6 NC_005262.1 + 48083 0.7 0.651208
Target:  5'- ----aCGAGCCGCccgGCGCCGAcgcgCGAUg -3'
miRNA:   3'- ucuuaGCUUGGUGa--CGCGGCUa---GCUA- -5'
24064 5' -52.6 NC_005262.1 + 36870 0.69 0.706505
Target:  5'- cAGAAUgcagUGAACCACUGCGCgcaGA-CGAa -3'
miRNA:   3'- -UCUUA----GCUUGGUGACGCGg--CUaGCUa -5'
24064 5' -52.6 NC_005262.1 + 43468 0.69 0.717386
Target:  5'- cGAGUCGAGCCGCUucGUGgCGG-CGAc -3'
miRNA:   3'- uCUUAGCUUGGUGA--CGCgGCUaGCUa -5'
24064 5' -52.6 NC_005262.1 + 45137 0.69 0.717386
Target:  5'- uGGAAUCG-GCCGCU-CGCCgGGUUGAUc -3'
miRNA:   3'- -UCUUAGCuUGGUGAcGCGG-CUAGCUA- -5'
24064 5' -52.6 NC_005262.1 + 28432 0.69 0.727105
Target:  5'- cGAAUCGGGCCGCgccgugcucgccgUGuCGCCGAU-GAUg -3'
miRNA:   3'- uCUUAGCUUGGUG-------------AC-GCGGCUAgCUA- -5'
24064 5' -52.6 NC_005262.1 + 34024 0.69 0.72818
Target:  5'- ----cCGGGCCGCaucgUGCGCCGcGUCGAUc -3'
miRNA:   3'- ucuuaGCUUGGUG----ACGCGGC-UAGCUA- -5'
24064 5' -52.6 NC_005262.1 + 60067 0.69 0.72818
Target:  5'- gAGGAUCGggUgCAUgcGCGCCuGAUCGAg -3'
miRNA:   3'- -UCUUAGCuuG-GUGa-CGCGG-CUAGCUa -5'
24064 5' -52.6 NC_005262.1 + 50393 0.69 0.738876
Target:  5'- cGAcgCGAACCGC-GCGgCGAUCa-- -3'
miRNA:   3'- uCUuaGCUUGGUGaCGCgGCUAGcua -5'
24064 5' -52.6 NC_005262.1 + 12574 0.68 0.759923
Target:  5'- --cGUCGAGCUGCUGCuGCCGccggCGAg -3'
miRNA:   3'- ucuUAGCUUGGUGACG-CGGCua--GCUa -5'
24064 5' -52.6 NC_005262.1 + 35989 0.67 0.800307
Target:  5'- cGGGAUCGugcguuCCAC-GUGCCGcgCGAg -3'
miRNA:   3'- -UCUUAGCuu----GGUGaCGCGGCuaGCUa -5'
24064 5' -52.6 NC_005262.1 + 3020 0.67 0.819459
Target:  5'- uAGAG-CGAgcgaucaccACUACUGCGCCGAccaGAUg -3'
miRNA:   3'- -UCUUaGCU---------UGGUGACGCGGCUag-CUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.