Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24064 | 5' | -52.6 | NC_005262.1 | + | 3020 | 0.67 | 0.819459 |
Target: 5'- uAGAG-CGAgcgaucaccACUACUGCGCCGAccaGAUg -3' miRNA: 3'- -UCUUaGCU---------UGGUGACGCGGCUag-CUA- -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 10693 | 0.66 | 0.862797 |
Target: 5'- uGGAGUCGuccaugucaucgaAGCCGCUcGCGCCGcgCu-- -3' miRNA: 3'- -UCUUAGC-------------UUGGUGA-CGCGGCuaGcua -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 12574 | 0.68 | 0.759923 |
Target: 5'- --cGUCGAGCUGCUGCuGCCGccggCGAg -3' miRNA: 3'- ucuUAGCUUGGUGACG-CGGCua--GCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 17487 | 0.66 | 0.879611 |
Target: 5'- cGAAgcgCGcGCCGCgcgcgacGCGUCGAUCGGc -3' miRNA: 3'- uCUUa--GCuUGGUGa------CGCGGCUAGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 21838 | 0.66 | 0.871745 |
Target: 5'- uGAcgCGuGCCGCUGCG-CGAUCu-- -3' miRNA: 3'- uCUuaGCuUGGUGACGCgGCUAGcua -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 22674 | 0.66 | 0.871745 |
Target: 5'- aGGGcgCGGACCAgUGCGCaGAcgcgccUCGAc -3' miRNA: 3'- -UCUuaGCUUGGUgACGCGgCU------AGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 23178 | 0.89 | 0.047925 |
Target: 5'- cAGGAUCGAACCGCUGCGUCGAUCc-- -3' miRNA: 3'- -UCUUAGCUUGGUGACGCGGCUAGcua -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 27429 | 0.71 | 0.595446 |
Target: 5'- --cGUCGAgauucuugACCAC-GUGCCGAUCGAUc -3' miRNA: 3'- ucuUAGCU--------UGGUGaCGCGGCUAGCUA- -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 27920 | 0.66 | 0.846643 |
Target: 5'- cGAcgUGAACCACa-CGCCGuUCGAg -3' miRNA: 3'- uCUuaGCUUGGUGacGCGGCuAGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 28432 | 0.69 | 0.727105 |
Target: 5'- cGAAUCGGGCCGCgccgugcucgccgUGuCGCCGAU-GAUg -3' miRNA: 3'- uCUUAGCUUGGUG-------------AC-GCGGCUAgCUA- -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 30409 | 0.66 | 0.871745 |
Target: 5'- ----aCGAGCCGCgUGCGCUGGaCGGc -3' miRNA: 3'- ucuuaGCUUGGUG-ACGCGGCUaGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 30620 | 0.67 | 0.837801 |
Target: 5'- -aGAUCGAGCCGC--CGCCGAcgcUCGGc -3' miRNA: 3'- ucUUAGCUUGGUGacGCGGCU---AGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 31358 | 0.71 | 0.595446 |
Target: 5'- uGGccgCGGACgACUGCggcuGCCGAUCGAUg -3' miRNA: 3'- -UCuuaGCUUGgUGACG----CGGCUAGCUA- -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 33321 | 0.71 | 0.583244 |
Target: 5'- cGAGUCGGACgcaacugcguCGCUGCgcggcaccgugccGCCGAUCGAc -3' miRNA: 3'- uCUUAGCUUG----------GUGACG-------------CGGCUAGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 34024 | 0.69 | 0.72818 |
Target: 5'- ----cCGGGCCGCaucgUGCGCCGcGUCGAUc -3' miRNA: 3'- ucuuaGCUUGGUG----ACGCGGC-UAGCUA- -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 35989 | 0.67 | 0.800307 |
Target: 5'- cGGGAUCGugcguuCCAC-GUGCCGcgCGAg -3' miRNA: 3'- -UCUUAGCuu----GGUGaCGCGGCuaGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 36870 | 0.69 | 0.706505 |
Target: 5'- cAGAAUgcagUGAACCACUGCGCgcaGA-CGAa -3' miRNA: 3'- -UCUUA----GCUUGGUGACGCGg--CUaGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 37674 | 0.72 | 0.518933 |
Target: 5'- gAGGcgGUCGAACCAUUGaCGCUGGuaUCGAa -3' miRNA: 3'- -UCU--UAGCUUGGUGAC-GCGGCU--AGCUa -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 39819 | 0.73 | 0.487298 |
Target: 5'- uGGggUUGAugCGCUGCGCCugcuGcgCGAUc -3' miRNA: 3'- -UCuuAGCUugGUGACGCGG----CuaGCUA- -5' |
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24064 | 5' | -52.6 | NC_005262.1 | + | 40739 | 0.67 | 0.835105 |
Target: 5'- uGggUCGggUCGCUGaCGCCGugcccguggccgggGUCGu- -3' miRNA: 3'- uCuuAGCuuGGUGAC-GCGGC--------------UAGCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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