Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24076 | 3' | -55.9 | NC_005262.1 | + | 53305 | 1.09 | 0.001039 |
Target: 5'- gCAAGGGCACGAUGGACAAGGCGAGCGa -3' miRNA: 3'- -GUUCCCGUGCUACCUGUUCCGCUCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 23819 | 0.73 | 0.335833 |
Target: 5'- gAGGGGUugGucaucucAUGGGCGccGGCGAGCGc -3' miRNA: 3'- gUUCCCGugC-------UACCUGUu-CCGCUCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 9718 | 0.72 | 0.361443 |
Target: 5'- cCGAGGGCGCcauacgcGUcGuCAAGGCGAGCGg -3' miRNA: 3'- -GUUCCCGUGc------UAcCuGUUCCGCUCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 60099 | 0.71 | 0.424087 |
Target: 5'- --cGGGCACGAUcaacauggucGGGCAcgaGGGCGccAGCGu -3' miRNA: 3'- guuCCCGUGCUA----------CCUGU---UCCGC--UCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 56245 | 0.7 | 0.456766 |
Target: 5'- uCAAGGGCGCGucgcacaucaucuucAcGGACAucgggcucGGCGAGCa -3' miRNA: 3'- -GUUCCCGUGC---------------UaCCUGUu-------CCGCUCGc -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 60611 | 0.7 | 0.462673 |
Target: 5'- -cAGGGCACGGcgaacgccaUGcGCAcgcuGGCGAGCGg -3' miRNA: 3'- guUCCCGUGCU---------ACcUGUu---CCGCUCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 24787 | 0.7 | 0.466633 |
Target: 5'- --cGGGCgagcacuucgacaucGCGAaGGGCAAGcGCGAGCu -3' miRNA: 3'- guuCCCG---------------UGCUaCCUGUUC-CGCUCGc -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 45322 | 0.7 | 0.472606 |
Target: 5'- aCAAcGGCGCGAUGcaaggucuGCAAGGCGGcGCGg -3' miRNA: 3'- -GUUcCCGUGCUACc-------UGUUCCGCU-CGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 36123 | 0.69 | 0.534264 |
Target: 5'- ----uGCGCGAUacGGCGAGGCGAGCa -3' miRNA: 3'- guuccCGUGCUAc-CUGUUCCGCUCGc -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 59503 | 0.69 | 0.544833 |
Target: 5'- gAGGGGCGCG-UGauUGAGGCGGGUGc -3' miRNA: 3'- gUUCCCGUGCuACcuGUUCCGCUCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 36759 | 0.68 | 0.566164 |
Target: 5'- uGAGGu--CGAUGG-CGGGGCGGGCu -3' miRNA: 3'- gUUCCcguGCUACCuGUUCCGCUCGc -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 32151 | 0.68 | 0.566164 |
Target: 5'- gCGGGcGGCACG-UGGAUcgacuuccagAAGGCG-GCGg -3' miRNA: 3'- -GUUC-CCGUGCuACCUG----------UUCCGCuCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 61065 | 0.68 | 0.566164 |
Target: 5'- --cGGGaccuCGA-GGcGCAGGGCGAGCGc -3' miRNA: 3'- guuCCCgu--GCUaCC-UGUUCCGCUCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 9682 | 0.68 | 0.598532 |
Target: 5'- gCGAGGGCGCcGUcGACGucgAGGCGcAGCa -3' miRNA: 3'- -GUUCCCGUGcUAcCUGU---UCCGC-UCGc -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 49327 | 0.68 | 0.609388 |
Target: 5'- -cAGGGCAUGAccGACGagcAGGCGcGCGc -3' miRNA: 3'- guUCCCGUGCUacCUGU---UCCGCuCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 16580 | 0.68 | 0.609388 |
Target: 5'- cCGAGcaGGCGCGugugcUGGuCGAGGCG-GCGa -3' miRNA: 3'- -GUUC--CCGUGCu----ACCuGUUCCGCuCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 60318 | 0.67 | 0.630061 |
Target: 5'- --cGGGCGCGAUccgcaaugGGugAGGGaggucgaCGGGCGg -3' miRNA: 3'- guuCCCGUGCUA--------CCugUUCC-------GCUCGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 25701 | 0.67 | 0.66811 |
Target: 5'- gCGAGGGCgaguucuacaacaucACGAUgcaGGcCGAGGCGAucGCGc -3' miRNA: 3'- -GUUCCCG---------------UGCUA---CCuGUUCCGCU--CGC- -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 55444 | 0.67 | 0.673523 |
Target: 5'- -cAGGGCAgCGAgaagaaGGACAAGGUgcugucguucgagGAGCu -3' miRNA: 3'- guUCCCGU-GCUa-----CCUGUUCCG-------------CUCGc -5' |
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24076 | 3' | -55.9 | NC_005262.1 | + | 35235 | 0.67 | 0.674604 |
Target: 5'- -cGGcGGCGCGAUcGGCAGcGGCuGGGCGc -3' miRNA: 3'- guUC-CCGUGCUAcCUGUU-CCG-CUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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