miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 3' -55.9 NC_005262.1 + 44157 0.66 0.738385
Target:  5'- --cGcGCGCGAUcGGGCAGGaGCGcGGCGg -3'
miRNA:   3'- guuCcCGUGCUA-CCUGUUC-CGC-UCGC- -5'
24076 3' -55.9 NC_005262.1 + 55444 0.67 0.673523
Target:  5'- -cAGGGCAgCGAgaagaaGGACAAGGUgcugucguucgagGAGCu -3'
miRNA:   3'- guUCCCGU-GCUa-----CCUGUUCCG-------------CUCGc -5'
24076 3' -55.9 NC_005262.1 + 35235 0.67 0.674604
Target:  5'- -cGGcGGCGCGAUcGGCAGcGGCuGGGCGc -3'
miRNA:   3'- guUC-CCGUGCUAcCUGUU-CCG-CUCGC- -5'
24076 3' -55.9 NC_005262.1 + 982 0.66 0.706817
Target:  5'- cCGAGuGGCGaccUGcgGGGCGGGGCG-GUGu -3'
miRNA:   3'- -GUUC-CCGU---GCuaCCUGUUCCGCuCGC- -5'
24076 3' -55.9 NC_005262.1 + 27544 0.66 0.716369
Target:  5'- aCGAGGGCgagcucagccccgGCGA-GGACGccGCGcAGCGc -3'
miRNA:   3'- -GUUCCCG-------------UGCUaCCUGUucCGC-UCGC- -5'
24076 3' -55.9 NC_005262.1 + 60552 0.66 0.717426
Target:  5'- gCAAGGGCACGcu-GACGccGGCGcucGGCGc -3'
miRNA:   3'- -GUUCCCGUGCuacCUGUu-CCGC---UCGC- -5'
24076 3' -55.9 NC_005262.1 + 10230 0.66 0.717426
Target:  5'- ----cGCGacgaccgauCGAUacaaGGACAAGGCGAGCGg -3'
miRNA:   3'- guuccCGU---------GCUA----CCUGUUCCGCUCGC- -5'
24076 3' -55.9 NC_005262.1 + 17538 0.66 0.727953
Target:  5'- --cGGGCACGcgGucgcgcGCGAGGCG-GCa -3'
miRNA:   3'- guuCCCGUGCuaCc-----UGUUCCGCuCGc -5'
24076 3' -55.9 NC_005262.1 + 49149 0.66 0.727953
Target:  5'- ---cGGCACGGUGGGCGugcAGGCc-GCa -3'
miRNA:   3'- guucCCGUGCUACCUGU---UCCGcuCGc -5'
24076 3' -55.9 NC_005262.1 + 25701 0.67 0.66811
Target:  5'- gCGAGGGCgaguucuacaacaucACGAUgcaGGcCGAGGCGAucGCGc -3'
miRNA:   3'- -GUUCCCG---------------UGCUA---CCuGUUCCGCU--CGC- -5'
24076 3' -55.9 NC_005262.1 + 49327 0.68 0.609388
Target:  5'- -cAGGGCAUGAccGACGagcAGGCGcGCGc -3'
miRNA:   3'- guUCCCGUGCUacCUGU---UCCGCuCGC- -5'
24076 3' -55.9 NC_005262.1 + 16580 0.68 0.609388
Target:  5'- cCGAGcaGGCGCGugugcUGGuCGAGGCG-GCGa -3'
miRNA:   3'- -GUUC--CCGUGCu----ACCuGUUCCGCuCGC- -5'
24076 3' -55.9 NC_005262.1 + 9718 0.72 0.361443
Target:  5'- cCGAGGGCGCcauacgcGUcGuCAAGGCGAGCGg -3'
miRNA:   3'- -GUUCCCGUGc------UAcCuGUUCCGCUCGC- -5'
24076 3' -55.9 NC_005262.1 + 60099 0.71 0.424087
Target:  5'- --cGGGCACGAUcaacauggucGGGCAcgaGGGCGccAGCGu -3'
miRNA:   3'- guuCCCGUGCUA----------CCUGU---UCCGC--UCGC- -5'
24076 3' -55.9 NC_005262.1 + 56245 0.7 0.456766
Target:  5'- uCAAGGGCGCGucgcacaucaucuucAcGGACAucgggcucGGCGAGCa -3'
miRNA:   3'- -GUUCCCGUGC---------------UaCCUGUu-------CCGCUCGc -5'
24076 3' -55.9 NC_005262.1 + 60611 0.7 0.462673
Target:  5'- -cAGGGCACGGcgaacgccaUGcGCAcgcuGGCGAGCGg -3'
miRNA:   3'- guUCCCGUGCU---------ACcUGUu---CCGCUCGC- -5'
24076 3' -55.9 NC_005262.1 + 24787 0.7 0.466633
Target:  5'- --cGGGCgagcacuucgacaucGCGAaGGGCAAGcGCGAGCu -3'
miRNA:   3'- guuCCCG---------------UGCUaCCUGUUC-CGCUCGc -5'
24076 3' -55.9 NC_005262.1 + 45322 0.7 0.472606
Target:  5'- aCAAcGGCGCGAUGcaaggucuGCAAGGCGGcGCGg -3'
miRNA:   3'- -GUUcCCGUGCUACc-------UGUUCCGCU-CGC- -5'
24076 3' -55.9 NC_005262.1 + 36123 0.69 0.534264
Target:  5'- ----uGCGCGAUacGGCGAGGCGAGCa -3'
miRNA:   3'- guuccCGUGCUAc-CUGUUCCGCUCGc -5'
24076 3' -55.9 NC_005262.1 + 32151 0.68 0.566164
Target:  5'- gCGGGcGGCACG-UGGAUcgacuuccagAAGGCG-GCGg -3'
miRNA:   3'- -GUUC-CCGUGCuACCUG----------UUCCGCuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.