miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 5311 0.69 0.370777
Target:  5'- cGCCGCUACCagauggaucgUGCCGuccgacgucgugacGCCGCGCa--- -3'
miRNA:   3'- -CGGCGAUGGa---------GCGGC--------------UGGCGCGcuug -5'
24076 5' -59.6 NC_005262.1 + 6229 0.7 0.340795
Target:  5'- cGCCGagaUGCUgaaGCCcGCCGCGCGcACg -3'
miRNA:   3'- -CGGCg--AUGGag-CGGcUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 6298 0.71 0.288989
Target:  5'- cGCCGCcuucuUGCgCUCGCCGGCCGCcucuCGucGGCg -3'
miRNA:   3'- -CGGCG-----AUG-GAGCGGCUGGCGc---GC--UUG- -5'
24076 5' -59.6 NC_005262.1 + 6339 0.68 0.434989
Target:  5'- cGCCGCUugUagUCGCggcagagcuCGAacaCGCGCGGAUu -3'
miRNA:   3'- -CGGCGAugG--AGCG---------GCUg--GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6375 0.66 0.562141
Target:  5'- uGCCGgaGCgUUGUCGGCCGCcuucucgGCGGu- -3'
miRNA:   3'- -CGGCgaUGgAGCGGCUGGCG-------CGCUug -5'
24076 5' -59.6 NC_005262.1 + 6515 0.69 0.390301
Target:  5'- uCUGCUGCaCgcggGCCGugaGCUGCGCGAGCu -3'
miRNA:   3'- cGGCGAUG-Gag--CGGC---UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6516 0.7 0.332999
Target:  5'- aGCgCGCcgACCUCGCCGuCaCGCucGCGGAUc -3'
miRNA:   3'- -CG-GCGa-UGGAGCGGCuG-GCG--CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6666 0.66 0.542578
Target:  5'- gGCCGCgauguaCUCGCCGgagcccuugaGCUGCGUgccgugGAACa -3'
miRNA:   3'- -CGGCGaug---GAGCGGC----------UGGCGCG------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 6722 0.71 0.268754
Target:  5'- aGCCGCcgAUCUCGCCGAuCUGCucgGCGGu- -3'
miRNA:   3'- -CGGCGa-UGGAGCGGCU-GGCG---CGCUug -5'
24076 5' -59.6 NC_005262.1 + 6809 0.66 0.560072
Target:  5'- cGUCGCgcuugucguaggcggUCUUGCCGACCacgccCGCGAACu -3'
miRNA:   3'- -CGGCGau-------------GGAGCGGCUGGc----GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6865 0.69 0.38173
Target:  5'- gGCCGUaguCCUCggcgauGCCGGCCGCGaucgcguuuuCGAGCc -3'
miRNA:   3'- -CGGCGau-GGAG------CGGCUGGCGC----------GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 7177 0.71 0.282114
Target:  5'- uGCCGCUACCgCGUaauuGCgGCGCGAuuGCa -3'
miRNA:   3'- -CGGCGAUGGaGCGgc--UGgCGCGCU--UG- -5'
24076 5' -59.6 NC_005262.1 + 7186 0.67 0.472789
Target:  5'- cGuaGCUGCCcuUCGUCGcccaCGCGCGGAUg -3'
miRNA:   3'- -CggCGAUGG--AGCGGCug--GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 7507 0.77 0.117733
Target:  5'- aGCCGCgguuCUUCGCCGACUGCucgcCGAGCc -3'
miRNA:   3'- -CGGCGau--GGAGCGGCUGGCGc---GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 7864 0.77 0.117733
Target:  5'- gGCCGCcGCCcucgaUCGCCGgacggucgacguACUGCGCGAGCu -3'
miRNA:   3'- -CGGCGaUGG-----AGCGGC------------UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 8224 0.66 0.532372
Target:  5'- cGCgCGCUGCga-GCCGGCCGgGuCGAu- -3'
miRNA:   3'- -CG-GCGAUGgagCGGCUGGCgC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 8523 0.68 0.434989
Target:  5'- uGCCGaugcgGCCgaaCGCCGAgUGCGUGAu- -3'
miRNA:   3'- -CGGCga---UGGa--GCGGCUgGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 8772 0.75 0.166162
Target:  5'- -aCGUcuUGCCcgCGCCGACCGCGUGcGCg -3'
miRNA:   3'- cgGCG--AUGGa-GCGGCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 10187 0.68 0.416755
Target:  5'- uCCGUUACCU-GCCGAgCGgcgacgcgguUGCGAACa -3'
miRNA:   3'- cGGCGAUGGAgCGGCUgGC----------GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 10224 0.68 0.407816
Target:  5'- -aUGCUGCCggucaGCgCGugCGCGcCGAGCa -3'
miRNA:   3'- cgGCGAUGGag---CG-GCugGCGC-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.