miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 68 0.66 0.522235
Target:  5'- gGCCGCgg-CUCGCgaagaaguCGGCCGCGCcGcACg -3'
miRNA:   3'- -CGGCGaugGAGCG--------GCUGGCGCG-CuUG- -5'
24076 5' -59.6 NC_005262.1 + 232 0.7 0.313345
Target:  5'- -aCGCUACC--GCCGGCggcggcgggacauuuCGCGCGGACg -3'
miRNA:   3'- cgGCGAUGGagCGGCUG---------------GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 1049 0.67 0.472789
Target:  5'- uGCCgaauGCUGCggCGCUGACCGCcaGCGcGCc -3'
miRNA:   3'- -CGG----CGAUGgaGCGGCUGGCG--CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 1110 0.69 0.35678
Target:  5'- cGUCGCgcuccCCUgcCGCCG-CCGgGCGGACu -3'
miRNA:   3'- -CGGCGau---GGA--GCGGCuGGCgCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 1137 0.75 0.15769
Target:  5'- gGCCGCUgcggGCUUCgauGCUG-CCGCGCGGGCu -3'
miRNA:   3'- -CGGCGA----UGGAG---CGGCuGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 2386 0.72 0.243572
Target:  5'- gGCCGCcGCCuUCGCCu-CgCGCGCGAGg -3'
miRNA:   3'- -CGGCGaUGG-AGCGGcuG-GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 2627 0.69 0.389438
Target:  5'- cGCCGCgcGCCcgucagcUCGCCcGCCGcCGCGAu- -3'
miRNA:   3'- -CGGCGa-UGG-------AGCGGcUGGC-GCGCUug -5'
24076 5' -59.6 NC_005262.1 + 2723 0.66 0.563176
Target:  5'- gGCUGCgcCUUCGUCGACgGCGUa--- -3'
miRNA:   3'- -CGGCGauGGAGCGGCUGgCGCGcuug -5'
24076 5' -59.6 NC_005262.1 + 2940 0.71 0.282114
Target:  5'- cGCCGCgcauUGCCUcggccaucgccaCGCCGAUCGCGUaGGCc -3'
miRNA:   3'- -CGGCG----AUGGA------------GCGGCUGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 3303 0.7 0.332226
Target:  5'- cGCCGCgcgGCCcggcgucUCGCCcuGAUCGCGC-AGCg -3'
miRNA:   3'- -CGGCGa--UGG-------AGCGG--CUGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 3438 0.68 0.416755
Target:  5'- cGCCGCcuucagguUCUUGCCGuccuucagguaGCCGCGCGcGCc -3'
miRNA:   3'- -CGGCGau------GGAGCGGC-----------UGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 3590 0.7 0.332999
Target:  5'- uGCCG--ACCUCGCCGGCCG-GCu--- -3'
miRNA:   3'- -CGGCgaUGGAGCGGCUGGCgCGcuug -5'
24076 5' -59.6 NC_005262.1 + 3670 0.69 0.38173
Target:  5'- cUCGCgGCCgUCGCUGGCCGUGaCGAc- -3'
miRNA:   3'- cGGCGaUGG-AGCGGCUGGCGC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 4000 0.66 0.522235
Target:  5'- gGCCGgUGCCcucgaggaacgCGuuGACC-UGCGAGCg -3'
miRNA:   3'- -CGGCgAUGGa----------GCggCUGGcGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 4408 0.69 0.35678
Target:  5'- uGUCGCg----CGCCuGCUGCGCGAGCg -3'
miRNA:   3'- -CGGCGauggaGCGGcUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 4498 0.73 0.209511
Target:  5'- aGCCGCcguccggcaUGuCCUCGuuGAuCCGCGCGAcGCg -3'
miRNA:   3'- -CGGCG---------AU-GGAGCggCU-GGCGCGCU-UG- -5'
24076 5' -59.6 NC_005262.1 + 4855 0.71 0.268754
Target:  5'- aCUGCUGCg-CGCCGACCGagaaGCGcGCg -3'
miRNA:   3'- cGGCGAUGgaGCGGCUGGCg---CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 4943 0.67 0.453675
Target:  5'- cGCCgGCgugACgUCGCCGAuCUGCGUGccgaAGCg -3'
miRNA:   3'- -CGG-CGa--UGgAGCGGCU-GGCGCGC----UUG- -5'
24076 5' -59.6 NC_005262.1 + 5001 0.68 0.425814
Target:  5'- cGCCGaucACgUCGUCGACCcaGCGCcgGAACg -3'
miRNA:   3'- -CGGCga-UGgAGCGGCUGG--CGCG--CUUG- -5'
24076 5' -59.6 NC_005262.1 + 5029 0.7 0.332999
Target:  5'- aGCgGCagUugCUCGCCGGCCgGCGCcugaucggcGGGCa -3'
miRNA:   3'- -CGgCG--AugGAGCGGCUGG-CGCG---------CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.