miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 53340 1.1 0.000421
Target:  5'- cGCCGCUACCUCGCCGACCGCGCGAACc -3'
miRNA:   3'- -CGGCGAUGGAGCGGCUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 58741 0.8 0.069561
Target:  5'- cGCCGCggGCCUgcccgccgaucaggCGCCGGCCG-GCGAGCa -3'
miRNA:   3'- -CGGCGa-UGGA--------------GCGGCUGGCgCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50081 0.79 0.084786
Target:  5'- gGCCGCUGCgC-CGaCCGaacccgcGCCGCGCGAACa -3'
miRNA:   3'- -CGGCGAUG-GaGC-GGC-------UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 29893 0.78 0.092278
Target:  5'- cGCCGCUACCgaucgggcCGCCGGCCGaCGCa--- -3'
miRNA:   3'- -CGGCGAUGGa-------GCGGCUGGC-GCGcuug -5'
24076 5' -59.6 NC_005262.1 + 18788 0.78 0.09744
Target:  5'- uGCCGCguguugGCgUcCGCCGccuGCCGCGCGGACu -3'
miRNA:   3'- -CGGCGa-----UGgA-GCGGC---UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 47730 0.78 0.099851
Target:  5'- cGCCGCcugUAUCUggugcgcCGCCGGCCGCGgCGAACc -3'
miRNA:   3'- -CGGCG---AUGGA-------GCGGCUGGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 30134 0.77 0.107717
Target:  5'- uGCCGCUGCUggUCGCCGaagcgccggcggauGCCGaCGCGAAg -3'
miRNA:   3'- -CGGCGAUGG--AGCGGC--------------UGGC-GCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 28563 0.77 0.114301
Target:  5'- aGCCGCUGCCgaucgCGCCG-CCGaccuccgcauccuUGCGGACg -3'
miRNA:   3'- -CGGCGAUGGa----GCGGCuGGC-------------GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50433 0.77 0.114609
Target:  5'- gGCCGCgugcACgUCGUCGuGCCGCGCGAGg -3'
miRNA:   3'- -CGGCGa---UGgAGCGGC-UGGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 18161 0.77 0.114609
Target:  5'- -gCGCgUGCC-CGCCuGAUCGCGCGAGCg -3'
miRNA:   3'- cgGCG-AUGGaGCGG-CUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 7507 0.77 0.117733
Target:  5'- aGCCGCgguuCUUCGCCGACUGCucgcCGAGCc -3'
miRNA:   3'- -CGGCGau--GGAGCGGCUGGCGc---GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 7864 0.77 0.117733
Target:  5'- gGCCGCcGCCcucgaUCGCCGgacggucgacguACUGCGCGAGCu -3'
miRNA:   3'- -CGGCGaUGG-----AGCGGC------------UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 43025 0.76 0.13244
Target:  5'- gGCCGCUACCUCGCCagcuacgaguacaucGAcccggccggcaCCGCGCGccGCg -3'
miRNA:   3'- -CGGCGAUGGAGCGG---------------CU-----------GGCGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 46252 0.76 0.134572
Target:  5'- gGCUGCcGCCUCGCgcgCGACCGCGUGcccguGCa -3'
miRNA:   3'- -CGGCGaUGGAGCG---GCUGGCGCGCu----UG- -5'
24076 5' -59.6 NC_005262.1 + 51193 0.76 0.134572
Target:  5'- cGCgGCgGCC-CGCUGgaGCCGCGCGGGCg -3'
miRNA:   3'- -CGgCGaUGGaGCGGC--UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 37807 0.75 0.145713
Target:  5'- cGUCGCgaacgUGCC-CGCCGuguACUGCGCGAGCg -3'
miRNA:   3'- -CGGCG-----AUGGaGCGGC---UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 52790 0.75 0.14961
Target:  5'- aGCCGCcucgCUCGUCaGCCGUGCGAGCg -3'
miRNA:   3'- -CGGCGaug-GAGCGGcUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 1137 0.75 0.15769
Target:  5'- gGCCGCUgcggGCUUCgauGCUG-CCGCGCGGGCu -3'
miRNA:   3'- -CGGCGA----UGGAG---CGGCuGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 56929 0.75 0.161876
Target:  5'- gGCCGCgcUCgagaagcgcaCGCCGAuCCGCGCGGGCg -3'
miRNA:   3'- -CGGCGauGGa---------GCGGCU-GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 14145 0.75 0.165297
Target:  5'- uGCCGCcGCCUugcaggcCGCCGAUCGCGaggccacCGAGCg -3'
miRNA:   3'- -CGGCGaUGGA-------GCGGCUGGCGC-------GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.