Results 1 - 20 of 237 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 60479 | 0.65 | 0.569398 |
Target: 5'- -aCGCUGCgCgaucagggcgagaCGCCgGGCCGCGCGGcGCa -3' miRNA: 3'- cgGCGAUG-Ga------------GCGG-CUGGCGCGCU-UG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 23546 | 0.66 | 0.512175 |
Target: 5'- aCCGCgcagacugACCaacCGCCcGCCGCGCGcgGGCg -3' miRNA: 3'- cGGCGa-------UGGa--GCGGcUGGCGCGC--UUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 58916 | 0.66 | 0.542578 |
Target: 5'- gGCCgGCgGCC-CGaCCGAUgGCGCGcGCu -3' miRNA: 3'- -CGG-CGaUGGaGC-GGCUGgCGCGCuUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 45961 | 0.66 | 0.563176 |
Target: 5'- gGCCGCguuuccAUCUCGCCaguuGCCGgGguCGAACg -3' miRNA: 3'- -CGGCGa-----UGGAGCGGc---UGGCgC--GCUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 14255 | 0.66 | 0.552848 |
Target: 5'- -aCGCaGCgUCGCCGgagacggaagugGCaaaGCGCGAACu -3' miRNA: 3'- cgGCGaUGgAGCGGC------------UGg--CGCGCUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 28724 | 0.66 | 0.551819 |
Target: 5'- cGCCGCgagGCCgcgCGCCcggacgccgugauGACCGUGaaGAAUg -3' miRNA: 3'- -CGGCGa--UGGa--GCGG-------------CUGGCGCg-CUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 16052 | 0.66 | 0.552848 |
Target: 5'- cGCCGCUACCgCGacuugCGGCCGaCGauccugaugaCGAACc -3' miRNA: 3'- -CGGCGAUGGaGCg----GCUGGC-GC----------GCUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 56117 | 0.66 | 0.512175 |
Target: 5'- -gCGUUuCgUCGacCCGACCGCGcCGAGCg -3' miRNA: 3'- cgGCGAuGgAGC--GGCUGGCGC-GCUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 45123 | 0.66 | 0.542578 |
Target: 5'- uGCCGCgaacACCgcgCGCCaGAaCGUGCGcGACa -3' miRNA: 3'- -CGGCGa---UGGa--GCGG-CUgGCGCGC-UUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 59140 | 0.66 | 0.542578 |
Target: 5'- gGCCGg-GCCgCGUCG-CCGCGCGcAUg -3' miRNA: 3'- -CGGCgaUGGaGCGGCuGGCGCGCuUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 68 | 0.66 | 0.522235 |
Target: 5'- gGCCGCgg-CUCGCgaagaaguCGGCCGCGCcGcACg -3' miRNA: 3'- -CGGCGaugGAGCG--------GCUGGCGCG-CuUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 46672 | 0.66 | 0.532372 |
Target: 5'- cGCCGgcACCgacgccCGCCGaugcagucagcGCCGCGCGcGCa -3' miRNA: 3'- -CGGCgaUGGa-----GCGGC-----------UGGCGCGCuUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 33663 | 0.66 | 0.532372 |
Target: 5'- -gCGC-GCCUCGCUGgucGCCGCGUacACg -3' miRNA: 3'- cgGCGaUGGAGCGGC---UGGCGCGcuUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 51306 | 0.66 | 0.552848 |
Target: 5'- uGCCGCUcgACCagaugggCGCau-CCGCGCGcGGCa -3' miRNA: 3'- -CGGCGA--UGGa------GCGgcuGGCGCGC-UUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 49439 | 0.66 | 0.563176 |
Target: 5'- aCCGCcGCCa-GUCGACgCGCGCaAGCa -3' miRNA: 3'- cGGCGaUGGagCGGCUG-GCGCGcUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 34828 | 0.66 | 0.562141 |
Target: 5'- uGCCGaucAgCUCcCCGACuuccucgCGCGCGAGCa -3' miRNA: 3'- -CGGCga-UgGAGcGGCUG-------GCGCGCUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 36008 | 0.66 | 0.542578 |
Target: 5'- uGCCGCgcgagUGCCgUCGCaucaucguGCCGCGUGGAg -3' miRNA: 3'- -CGGCG-----AUGG-AGCGgc------UGGCGCGCUUg -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 40304 | 0.66 | 0.542578 |
Target: 5'- gGCCGCagcaguucaACCcCGgCGACCGCuuCGAGCa -3' miRNA: 3'- -CGGCGa--------UGGaGCgGCUGGCGc-GCUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 28800 | 0.66 | 0.563176 |
Target: 5'- aCCGUgACCUCG-CGcCCGCGCaucucGAGCu -3' miRNA: 3'- cGGCGaUGGAGCgGCuGGCGCG-----CUUG- -5' |
|||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 45258 | 0.66 | 0.552848 |
Target: 5'- aCCgGCaACCUcggagCGUCGAacgcgaacuuCCGCGCGAACg -3' miRNA: 3'- cGG-CGaUGGA-----GCGGCU----------GGCGCGCUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home