miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 48076 0.72 0.225998
Target:  5'- uGCCGCgacgaGCCgcccggCGCCGA-CGCGCGAu- -3'
miRNA:   3'- -CGGCGa----UGGa-----GCGGCUgGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 22920 0.73 0.194071
Target:  5'- aCUGCUACgcgCUCGCCGAcgccaugcuCCGCGCGGGg -3'
miRNA:   3'- cGGCGAUG---GAGCGGCU---------GGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 50123 0.73 0.199104
Target:  5'- gGCCGa-GCgCUCGCUGACCGaguggaGCGAGCc -3'
miRNA:   3'- -CGGCgaUG-GAGCGGCUGGCg-----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 31067 0.73 0.20425
Target:  5'- cGCCGacGCgCUCGCCGACCugaaGgGCGAGCc -3'
miRNA:   3'- -CGGCgaUG-GAGCGGCUGG----CgCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 35548 0.73 0.214888
Target:  5'- aGCCGCgauguCgCUCGCCGGCgcgggaaagaGCGCGAAUg -3'
miRNA:   3'- -CGGCGau---G-GAGCGGCUGg---------CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 43821 0.73 0.214888
Target:  5'- cGCgGCgacacgGCCgcggGCCGGCCGCGCGcGGCg -3'
miRNA:   3'- -CGgCGa-----UGGag--CGGCUGGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 49743 0.73 0.214888
Target:  5'- aGCCGC-ACCgaCGCCGGCgGCGCccGCg -3'
miRNA:   3'- -CGGCGaUGGa-GCGGCUGgCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 10534 0.72 0.225998
Target:  5'- gGCCGaaacggcuaUGCCgacgCGaCCGGCCGCGCGcAGCc -3'
miRNA:   3'- -CGGCg--------AUGGa---GC-GGCUGGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 42568 0.72 0.225998
Target:  5'- aGCCGCUucCCUCGCuCGaauggaacgcGCCGC-CGGACg -3'
miRNA:   3'- -CGGCGAu-GGAGCG-GC----------UGGCGcGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 33781 0.75 0.166162
Target:  5'- cGCCGCUaccgACCUCaUCGcUCGCGCGGGCa -3'
miRNA:   3'- -CGGCGA----UGGAGcGGCuGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 56929 0.75 0.161876
Target:  5'- gGCCGCgcUCgagaagcgcaCGCCGAuCCGCGCGGGCg -3'
miRNA:   3'- -CGGCGauGGa---------GCGGCU-GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 1137 0.75 0.15769
Target:  5'- gGCCGCUgcggGCUUCgauGCUG-CCGCGCGGGCu -3'
miRNA:   3'- -CGGCGA----UGGAG---CGGCuGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50081 0.79 0.084786
Target:  5'- gGCCGCUGCgC-CGaCCGaacccgcGCCGCGCGAACa -3'
miRNA:   3'- -CGGCGAUG-GaGC-GGC-------UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 47730 0.78 0.099851
Target:  5'- cGCCGCcugUAUCUggugcgcCGCCGGCCGCGgCGAACc -3'
miRNA:   3'- -CGGCG---AUGGA-------GCGGCUGGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 30134 0.77 0.107717
Target:  5'- uGCCGCUGCUggUCGCCGaagcgccggcggauGCCGaCGCGAAg -3'
miRNA:   3'- -CGGCGAUGG--AGCGGC--------------UGGC-GCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 18161 0.77 0.114609
Target:  5'- -gCGCgUGCC-CGCCuGAUCGCGCGAGCg -3'
miRNA:   3'- cgGCG-AUGGaGCGG-CUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50433 0.77 0.114609
Target:  5'- gGCCGCgugcACgUCGUCGuGCCGCGCGAGg -3'
miRNA:   3'- -CGGCGa---UGgAGCGGC-UGGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 43025 0.76 0.13244
Target:  5'- gGCCGCUACCUCGCCagcuacgaguacaucGAcccggccggcaCCGCGCGccGCg -3'
miRNA:   3'- -CGGCGAUGGAGCGG---------------CU-----------GGCGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 51193 0.76 0.134572
Target:  5'- cGCgGCgGCC-CGCUGgaGCCGCGCGGGCg -3'
miRNA:   3'- -CGgCGaUGGaGCGGC--UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 37807 0.75 0.145713
Target:  5'- cGUCGCgaacgUGCC-CGCCGuguACUGCGCGAGCg -3'
miRNA:   3'- -CGGCG-----AUGGaGCGGC---UGGCGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.