miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 61148 0.68 0.35798
Target:  5'- uGGCgcagcagaucgCGGCGgCGGGCGaGCUGacGGGCGCg -3'
miRNA:   3'- uCCG-----------GCUGCaGCUCGC-CGAC--CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 23355 0.68 0.35798
Target:  5'- cGGCCGGCGUgaagcgCGcGGCGGCgaaGGcccgcaacgugaAGCGCc -3'
miRNA:   3'- uCCGGCUGCA------GC-UCGCCGa--CC------------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 43343 0.68 0.35798
Target:  5'- cAGG-CGGCGaUCGAcGCGGCgaaGGCGCa -3'
miRNA:   3'- -UCCgGCUGC-AGCU-CGCCGaccUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 11055 0.68 0.35798
Target:  5'- cAGGCCGcaGCGUcgccugagccCGAGCGGCcaaaGGGCGg -3'
miRNA:   3'- -UCCGGC--UGCA----------GCUCGCCGac--CUCGCg -5'
24091 3' -61.6 NC_005262.1 + 61430 0.68 0.357176
Target:  5'- cGGCCGAggaauuccaCGUCGcgaagaaGGCGGCggacGGcgaAGCGCu -3'
miRNA:   3'- uCCGGCU---------GCAGC-------UCGCCGa---CC---UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 18889 0.68 0.352374
Target:  5'- -cGCCG-UGUCGAugaacuggucuugcaGCGGCUGGAacacauccuuguaGCGCu -3'
miRNA:   3'- ucCGGCuGCAGCU---------------CGCCGACCU-------------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 38554 0.68 0.34999
Target:  5'- aGGaGCCGGCGUUGcgcGCGGUUcGGGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGCu--CGCCGAcCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 9364 0.68 0.34999
Target:  5'- cGGUCGGCG-CGcGCGGC-GGccuGCGCc -3'
miRNA:   3'- uCCGGCUGCaGCuCGCCGaCCu--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 43694 0.68 0.34999
Target:  5'- cGGGCCGAauUCGcGCGGCgac-GCGCu -3'
miRNA:   3'- -UCCGGCUgcAGCuCGCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 13693 0.68 0.349198
Target:  5'- cGGCCGGCuucuguUCGcGCGGCgcgGGuucggucGGCGCa -3'
miRNA:   3'- uCCGGCUGc-----AGCuCGCCGa--CC-------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 53456 0.68 0.345257
Target:  5'- cGGcGCCGGCGUCGAggacaacggcgugaaGUGGCUcGGcacggccgaAGUGCa -3'
miRNA:   3'- -UC-CGGCUGCAGCU---------------CGCCGA-CC---------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 15717 0.68 0.342128
Target:  5'- -cGUCGGCGcCGGGCGGCUcgucgcGGcaGGUGCg -3'
miRNA:   3'- ucCGGCUGCaGCUCGCCGA------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 9594 0.68 0.334394
Target:  5'- cGGCUcGCG-CGGGC-GCUGGAGCacGCg -3'
miRNA:   3'- uCCGGcUGCaGCUCGcCGACCUCG--CG- -5'
24091 3' -61.6 NC_005262.1 + 13792 0.68 0.334394
Target:  5'- cGGUgGGCGcCGGcGCGGCUucaucggcgGGAGCGg -3'
miRNA:   3'- uCCGgCUGCaGCU-CGCCGA---------CCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 14238 0.68 0.334394
Target:  5'- cGGCCu-CGUUcuGCGcgaccuGCUGGAGCGCg -3'
miRNA:   3'- uCCGGcuGCAGcuCGC------CGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 34030 0.68 0.329815
Target:  5'- cGGCaCuACGcCGGGCGGUUgaggcggguuagccgGGAGCGCc -3'
miRNA:   3'- uCCG-GcUGCaGCUCGCCGA---------------CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60391 0.68 0.311965
Target:  5'- cGGCCGcaagauCGUCG-GCGGCau-GGCGCa -3'
miRNA:   3'- uCCGGCu-----GCAGCuCGCCGaccUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 21431 0.68 0.311965
Target:  5'- cGGCCGACGUCc-GCGaGCUGGucgaguucCGCc -3'
miRNA:   3'- uCCGGCUGCAGcuCGC-CGACCuc------GCG- -5'
24091 3' -61.6 NC_005262.1 + 5045 0.69 0.297657
Target:  5'- cGGCCGGCGccugaUCGGcgggcaggcccGCGGC-GGcGGCGCg -3'
miRNA:   3'- uCCGGCUGC-----AGCU-----------CGCCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 51834 0.69 0.297657
Target:  5'- cGGCCGACGU-GcGCGaaguGCUGaAGCGCg -3'
miRNA:   3'- uCCGGCUGCAgCuCGC----CGACcUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.