miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 12616 0.7 0.239567
Target:  5'- cGGGCCGccGCGUCGu-CGGCUGccugcuGCGCg -3'
miRNA:   3'- -UCCGGC--UGCAGCucGCCGACcu----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 12805 0.66 0.444638
Target:  5'- uGGgCGGCG-CGcAGcCGGCgcgugaagaaGGAGCGCg -3'
miRNA:   3'- uCCgGCUGCaGC-UC-GCCGa---------CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 13693 0.68 0.349198
Target:  5'- cGGCCGGCuucuguUCGcGCGGCgcgGGuucggucGGCGCa -3'
miRNA:   3'- uCCGGCUGc-----AGCuCGCCGa--CC-------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 13792 0.68 0.334394
Target:  5'- cGGUgGGCGcCGGcGCGGCUucaucggcgGGAGCGg -3'
miRNA:   3'- uCCGgCUGCaGCU-CGCCGA---------CCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 14059 0.71 0.228016
Target:  5'- -cGCCGGCGUCGGuGCGGCUucGGcCGCc -3'
miRNA:   3'- ucCGGCUGCAGCU-CGCCGAccUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 14238 0.68 0.334394
Target:  5'- cGGCCu-CGUUcuGCGcgaccuGCUGGAGCGCg -3'
miRNA:   3'- uCCGGcuGCAGcuCGC------CGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 15108 0.72 0.191255
Target:  5'- cGGCgCGGCGUC---CGGCUGGAacGCGCu -3'
miRNA:   3'- uCCG-GCUGCAGcucGCCGACCU--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 15146 0.79 0.054569
Target:  5'- cGGCCGGCGUCGAGuCGGCgcggauguUGGAcggcacgcaGCGCu -3'
miRNA:   3'- uCCGGCUGCAGCUC-GCCG--------ACCU---------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 15588 0.72 0.19617
Target:  5'- gAGGCgCGcgcgcgcgaggaGCG-CGuGCGGCaGGAGCGCa -3'
miRNA:   3'- -UCCG-GC------------UGCaGCuCGCCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 15717 0.68 0.342128
Target:  5'- -cGUCGGCGcCGGGCGGCUcgucgcGGcaGGUGCg -3'
miRNA:   3'- ucCGGCUGCaGCUCGCCGA------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17081 0.66 0.426365
Target:  5'- uAGGCgCGccCGUCGAcGCGGC-GGGcCGCg -3'
miRNA:   3'- -UCCG-GCu-GCAGCU-CGCCGaCCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 17222 0.66 0.444638
Target:  5'- cGGcGCUGGCGUCGuggucgucgugGGCGucGCgGGAGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGC-----------UCGC--CGaCCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 17263 0.71 0.216941
Target:  5'- cGGCCGGCGcCGcGCugGGCUGcuGCGCg -3'
miRNA:   3'- uCCGGCUGCaGCuCG--CCGACcuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17290 0.69 0.283864
Target:  5'- cGGGCaggGGCGUC--GCGGUcGGAGUGCu -3'
miRNA:   3'- -UCCGg--CUGCAGcuCGCCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17338 0.71 0.201194
Target:  5'- uGGCCGGCGcggcauUCGGGUccGGCgcgGGcGGCGCg -3'
miRNA:   3'- uCCGGCUGC------AGCUCG--CCGa--CC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17399 0.66 0.417398
Target:  5'- cGGCCGACaauGcCGAGaC-GCUGG-GCGCc -3'
miRNA:   3'- uCCGGCUG---CaGCUC-GcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17594 0.71 0.228016
Target:  5'- -aGCUGGCGgCGcAGCGcgcggaGCUGGAGCGCc -3'
miRNA:   3'- ucCGGCUGCaGC-UCGC------CGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 18106 0.71 0.228016
Target:  5'- cGGCCGGCGUCGAcaauUGGgaGGguaucgacgaAGCGCu -3'
miRNA:   3'- uCCGGCUGCAGCUc---GCCgaCC----------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 18889 0.68 0.352374
Target:  5'- -cGCCG-UGUCGAugaacuggucuugcaGCGGCUGGAacacauccuuguaGCGCu -3'
miRNA:   3'- ucCGGCuGCAGCU---------------CGCCGACCU-------------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 21431 0.68 0.311965
Target:  5'- cGGCCGACGUCc-GCGaGCUGGucgaguucCGCc -3'
miRNA:   3'- uCCGGCUGCAGcuCGC-CGACCuc------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.