miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 206 0.69 0.283864
Target:  5'- -cGCCGGCGg-GGGCGGC-GGAGC-Ca -3'
miRNA:   3'- ucCGGCUGCagCUCGCCGaCCUCGcG- -5'
24091 3' -61.6 NC_005262.1 + 2257 0.67 0.391199
Target:  5'- cGGGCCG-CGUCGAuGaCGGCcc--GCGCa -3'
miRNA:   3'- -UCCGGCuGCAGCU-C-GCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 2463 0.66 0.444638
Target:  5'- cGGUgGACGUUGAGCaugcGCgUGGugccGCGCu -3'
miRNA:   3'- uCCGgCUGCAGCUCGc---CG-ACCu---CGCG- -5'
24091 3' -61.6 NC_005262.1 + 3619 0.66 0.426365
Target:  5'- cAGGCUGuACa-CGAGguccauCGGCUGGGcGCGCa -3'
miRNA:   3'- -UCCGGC-UGcaGCUC------GCCGACCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 4829 0.7 0.257803
Target:  5'- gAGGCCGcCGgCGGcCGGCUGGuucgacugcuGCGCg -3'
miRNA:   3'- -UCCGGCuGCaGCUcGCCGACCu---------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 5045 0.69 0.297657
Target:  5'- cGGCCGGCGccugaUCGGcgggcaggcccGCGGC-GGcGGCGCg -3'
miRNA:   3'- uCCGGCUGC-----AGCU-----------CGCCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 5177 0.74 0.140268
Target:  5'- cGGCCGGCGUCGcG-GGC-GcGGGCGCg -3'
miRNA:   3'- uCCGGCUGCAGCuCgCCGaC-CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 5293 0.66 0.417398
Target:  5'- uGGUCGAUcacgcgGUCGAgGCGGUcGGAGCu- -3'
miRNA:   3'- uCCGGCUG------CAGCU-CGCCGaCCUCGcg -5'
24091 3' -61.6 NC_005262.1 + 5892 0.7 0.233732
Target:  5'- --aUCGACGUCGAuGUcgGGCgGGAGCGCc -3'
miRNA:   3'- uccGGCUGCAGCU-CG--CCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 6609 0.69 0.283864
Target:  5'- cGGGUCGAgCGggagcgacaCGAGCGGCgaGGGGuCGCc -3'
miRNA:   3'- -UCCGGCU-GCa--------GCUCGCCGa-CCUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 8387 0.66 0.417398
Target:  5'- -aGCCGGCGcUCGAGCuGCUcGAugcgGCGCu -3'
miRNA:   3'- ucCGGCUGC-AGCUCGcCGAcCU----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 9134 0.66 0.426365
Target:  5'- gAGGaCCGGCGcCGGGcCGGUcGGAaUGCg -3'
miRNA:   3'- -UCC-GGCUGCaGCUC-GCCGaCCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 9364 0.68 0.34999
Target:  5'- cGGUCGGCG-CGcGCGGC-GGccuGCGCc -3'
miRNA:   3'- uCCGGCUGCaGCuCGCCGaCCu--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 9594 0.68 0.334394
Target:  5'- cGGCUcGCG-CGGGC-GCUGGAGCacGCg -3'
miRNA:   3'- uCCGGcUGCaGCUCGcCGACCUCG--CG- -5'
24091 3' -61.6 NC_005262.1 + 10461 0.67 0.391199
Target:  5'- cGGUCGGCGagGuAGCGGCgc--GCGCg -3'
miRNA:   3'- uCCGGCUGCagC-UCGCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 10877 0.7 0.251601
Target:  5'- cAGGCCGuCGuagaUCGAGCGgaucacgcccucGCUGGuguaguGCGCg -3'
miRNA:   3'- -UCCGGCuGC----AGCUCGC------------CGACCu-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 11010 0.77 0.075788
Target:  5'- cGGCUGACGagCGAgGCGGCUGucGCGCa -3'
miRNA:   3'- uCCGGCUGCa-GCU-CGCCGACcuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 11055 0.68 0.35798
Target:  5'- cAGGCCGcaGCGUcgccugagccCGAGCGGCcaaaGGGCGg -3'
miRNA:   3'- -UCCGGC--UGCA----------GCUCGCCGac--CUCGCg -5'
24091 3' -61.6 NC_005262.1 + 12170 0.67 0.374341
Target:  5'- aAGGCCGcGCuGUCuGcGCGGCaGGAGCa- -3'
miRNA:   3'- -UCCGGC-UG-CAG-CuCGCCGaCCUCGcg -5'
24091 3' -61.6 NC_005262.1 + 12428 0.71 0.216941
Target:  5'- uGGCCGGCGUCGcggacggcGCGGUgccGAGCuGCa -3'
miRNA:   3'- uCCGGCUGCAGCu-------CGCCGac-CUCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.