miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 56802 1.1 0.00029
Target:  5'- aAGGCCGACGUCGAGCGGCUGGAGCGCc -3'
miRNA:   3'- -UCCGGCUGCAGCUCGCCGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 58633 0.83 0.030492
Target:  5'- cAGGCuCGGCaGUCGAGCGGCcGGGcGCGCg -3'
miRNA:   3'- -UCCG-GCUG-CAGCUCGCCGaCCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 28366 0.8 0.048738
Target:  5'- cGaGCCGACGUCGAacacgaacacgucGCcgGGCUGGAGCGUg -3'
miRNA:   3'- uC-CGGCUGCAGCU-------------CG--CCGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 15146 0.79 0.054569
Target:  5'- cGGCCGGCGUCGAGuCGGCgcggauguUGGAcggcacgcaGCGCu -3'
miRNA:   3'- uCCGGCUGCAGCUC-GCCG--------ACCU---------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 40460 0.79 0.05926
Target:  5'- cGGCCGugGUCGAGCGcguGCUcGuGCGCg -3'
miRNA:   3'- uCCGGCugCAGCUCGC---CGAcCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 24977 0.78 0.064339
Target:  5'- cAGGCCGGCuugGUCGAgGCGGCauucGAGCGCg -3'
miRNA:   3'- -UCCGGCUG---CAGCU-CGCCGac--CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 35230 0.78 0.067957
Target:  5'- gAGGUCGGCGgcgCGAucggcaGCGGCUGG-GCGCc -3'
miRNA:   3'- -UCCGGCUGCa--GCU------CGCCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 30991 0.77 0.075788
Target:  5'- gAGGCCGACGUCGAacGCgauGGCcGGcGCGCc -3'
miRNA:   3'- -UCCGGCUGCAGCU--CG---CCGaCCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 11010 0.77 0.075788
Target:  5'- cGGCUGACGagCGAgGCGGCUGucGCGCa -3'
miRNA:   3'- uCCGGCUGCa-GCU-CGCCGACcuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 41564 0.76 0.099051
Target:  5'- cGGCCGGCGU-GGGCGGCgcgGccgugagcuugucGAGCGCg -3'
miRNA:   3'- uCCGGCUGCAgCUCGCCGa--C-------------CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 44901 0.75 0.116591
Target:  5'- aAGGCCGugGUCGGgacuggauGCGGCgcaaGGCGCu -3'
miRNA:   3'- -UCCGGCugCAGCU--------CGCCGacc-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 52708 0.74 0.131691
Target:  5'- cGGCCGACGcCGGacgaggccgcgcuGCugacgaaguucacgGGCUGGGGCGCc -3'
miRNA:   3'- uCCGGCUGCaGCU-------------CG--------------CCGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 5177 0.74 0.140268
Target:  5'- cGGCCGGCGUCGcG-GGC-GcGGGCGCg -3'
miRNA:   3'- uCCGGCUGCAGCuCgCCGaC-CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 33965 0.74 0.143991
Target:  5'- cGGaacgCGGCGUCGAGCuGCUGGAcgucGUGCg -3'
miRNA:   3'- uCCg---GCUGCAGCUCGcCGACCU----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 30915 0.73 0.151708
Target:  5'- uGGCCGACGuUCGAcGCGGCgaacgcucGGCGCc -3'
miRNA:   3'- uCCGGCUGC-AGCU-CGCCGacc-----UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 30869 0.73 0.166981
Target:  5'- cGGCCGAggaguCGcCGAGCGGCcGGAuggugacgccgcucGCGCu -3'
miRNA:   3'- uCCGGCU-----GCaGCUCGCCGaCCU--------------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 51184 0.72 0.177156
Target:  5'- -aGCCGACGaCGcGGCGGCccgcUGGAGcCGCg -3'
miRNA:   3'- ucCGGCUGCaGC-UCGCCG----ACCUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 56539 0.72 0.186449
Target:  5'- cGGCaucCGUCGAGCaGCgcgaGGGGCGCa -3'
miRNA:   3'- uCCGgcuGCAGCUCGcCGa---CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 15108 0.72 0.191255
Target:  5'- cGGCgCGGCGUC---CGGCUGGAacGCGCu -3'
miRNA:   3'- uCCG-GCUGCAGcucGCCGACCU--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 15588 0.72 0.19617
Target:  5'- gAGGCgCGcgcgcgcgaggaGCG-CGuGCGGCaGGAGCGCa -3'
miRNA:   3'- -UCCG-GC------------UGCaGCuCGCCGaCCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.