Results 1 - 20 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 44980 | 0.7 | 0.233732 |
Target: 5'- aGGGCCGACGUgcagcagucCGcGCGGCaGGcGGCGg -3' miRNA: 3'- -UCCGGCUGCA---------GCuCGCCGaCC-UCGCg -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 15588 | 0.72 | 0.19617 |
Target: 5'- gAGGCgCGcgcgcgcgaggaGCG-CGuGCGGCaGGAGCGCa -3' miRNA: 3'- -UCCG-GC------------UGCaGCuCGCCGaCCUCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 47147 | 0.71 | 0.206329 |
Target: 5'- aAGGUCGACG-CGAcCGGCgaGGcGCGCa -3' miRNA: 3'- -UCCGGCUGCaGCUcGCCGa-CCuCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 43837 | 0.71 | 0.211578 |
Target: 5'- cGGGCCGGcCG-CGcGCGGC-GGuGCGCc -3' miRNA: 3'- -UCCGGCU-GCaGCuCGCCGaCCuCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 24138 | 0.71 | 0.227451 |
Target: 5'- cGGgUGACGUucgaggaUGGGCGGCaGGAGgCGCa -3' miRNA: 3'- uCCgGCUGCA-------GCUCGCCGaCCUC-GCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 47564 | 0.71 | 0.227451 |
Target: 5'- aAGG-CGACGUCGcccgacgaagcgaAGCGGCUGGcuuucAGCGa -3' miRNA: 3'- -UCCgGCUGCAGC-------------UCGCCGACC-----UCGCg -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 17594 | 0.71 | 0.228016 |
Target: 5'- -aGCUGGCGgCGcAGCGcgcggaGCUGGAGCGCc -3' miRNA: 3'- ucCGGCUGCaGC-UCGC------CGACCUCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 18106 | 0.71 | 0.228016 |
Target: 5'- cGGCCGGCGUCGAcaauUGGgaGGguaucgacgaAGCGCu -3' miRNA: 3'- uCCGGCUGCAGCUc---GCCgaCC----------UCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 5892 | 0.7 | 0.233732 |
Target: 5'- --aUCGACGUCGAuGUcgGGCgGGAGCGCc -3' miRNA: 3'- uccGGCUGCAGCU-CG--CCGaCCUCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 56539 | 0.72 | 0.186449 |
Target: 5'- cGGCaucCGUCGAGCaGCgcgaGGGGCGCa -3' miRNA: 3'- uCCGgcuGCAGCUCGcCGa---CCUCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 51184 | 0.72 | 0.177156 |
Target: 5'- -aGCCGACGaCGcGGCGGCccgcUGGAGcCGCg -3' miRNA: 3'- ucCGGCUGCaGC-UCGCCG----ACCUC-GCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 30869 | 0.73 | 0.166981 |
Target: 5'- cGGCCGAggaguCGcCGAGCGGCcGGAuggugacgccgcucGCGCu -3' miRNA: 3'- uCCGGCU-----GCaGCUCGCCGaCCU--------------CGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 58633 | 0.83 | 0.030492 |
Target: 5'- cAGGCuCGGCaGUCGAGCGGCcGGGcGCGCg -3' miRNA: 3'- -UCCG-GCUG-CAGCUCGCCGaCCU-CGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 15146 | 0.79 | 0.054569 |
Target: 5'- cGGCCGGCGUCGAGuCGGCgcggauguUGGAcggcacgcaGCGCu -3' miRNA: 3'- uCCGGCUGCAGCUC-GCCG--------ACCU---------CGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 24977 | 0.78 | 0.064339 |
Target: 5'- cAGGCCGGCuugGUCGAgGCGGCauucGAGCGCg -3' miRNA: 3'- -UCCGGCUG---CAGCU-CGCCGac--CUCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 35230 | 0.78 | 0.067957 |
Target: 5'- gAGGUCGGCGgcgCGAucggcaGCGGCUGG-GCGCc -3' miRNA: 3'- -UCCGGCUGCa--GCU------CGCCGACCuCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 11010 | 0.77 | 0.075788 |
Target: 5'- cGGCUGACGagCGAgGCGGCUGucGCGCa -3' miRNA: 3'- uCCGGCUGCa-GCU-CGCCGACcuCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 52708 | 0.74 | 0.131691 |
Target: 5'- cGGCCGACGcCGGacgaggccgcgcuGCugacgaaguucacgGGCUGGGGCGCc -3' miRNA: 3'- uCCGGCUGCaGCU-------------CG--------------CCGACCUCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 5177 | 0.74 | 0.140268 |
Target: 5'- cGGCCGGCGUCGcG-GGC-GcGGGCGCg -3' miRNA: 3'- uCCGGCUGCAGCuCgCCGaC-CUCGCG- -5' |
|||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 33965 | 0.74 | 0.143991 |
Target: 5'- cGGaacgCGGCGUCGAGCuGCUGGAcgucGUGCg -3' miRNA: 3'- uCCg---GCUGCAGCUCGcCGACCU----CGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home