miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 3' -55.8 NC_005262.1 + 47741 0.68 0.614028
Target:  5'- uCUGGUgcGCCGCCG-GCcg--CGGCGAa -3'
miRNA:   3'- cGACUA--UGGCGGCuCGucuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 62674 0.68 0.603224
Target:  5'- cGCaGcgGCCGCaGAGCaAGAggCGGCGGa -3'
miRNA:   3'- -CGaCuaUGGCGgCUCG-UCUa-GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 10225 0.68 0.603224
Target:  5'- uGCUGccggucagcgcGUGCgCGCCGAGCaccaucucGGGguacgCGGCGAa -3'
miRNA:   3'- -CGAC-----------UAUG-GCGGCUCG--------UCUa----GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 41374 0.68 0.592443
Target:  5'- --gGGuUGCCGgCGAGCAGG-CGGCGc -3'
miRNA:   3'- cgaCU-AUGGCgGCUCGUCUaGCCGCu -5'
24092 3' -55.8 NC_005262.1 + 9747 0.68 0.592443
Target:  5'- aGCgGAUA-CGUCGAGgAGAaauUCGGCGGc -3'
miRNA:   3'- -CGaCUAUgGCGGCUCgUCU---AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 35147 0.68 0.592443
Target:  5'- cGCUGcAUACCGCCGAuccgggcgacGCuGG-CGGCa- -3'
miRNA:   3'- -CGAC-UAUGGCGGCU----------CGuCUaGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 41982 0.68 0.592443
Target:  5'- cCUGAcACCGCCGcGCAGAaC-GCGAc -3'
miRNA:   3'- cGACUaUGGCGGCuCGUCUaGcCGCU- -5'
24092 3' -55.8 NC_005262.1 + 57408 0.68 0.581695
Target:  5'- aGCUGA--CCGCCGAGaAGG-CGGCcGAc -3'
miRNA:   3'- -CGACUauGGCGGCUCgUCUaGCCG-CU- -5'
24092 3' -55.8 NC_005262.1 + 10445 0.69 0.575265
Target:  5'- uGCaGAUGCUcggcaaGCCGGGCGGAagccgcgacgacagCGGCGAc -3'
miRNA:   3'- -CGaCUAUGG------CGGCUCGUCUa-------------GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 29028 0.69 0.570988
Target:  5'- --cGAU-CCGCCGAGCucGAgCGGCGc -3'
miRNA:   3'- cgaCUAuGGCGGCUCGu-CUaGCCGCu -5'
24092 3' -55.8 NC_005262.1 + 9352 0.69 0.560328
Target:  5'- cGCUGAUACUuCCGgucGGCGcGcgCGGCGGc -3'
miRNA:   3'- -CGACUAUGGcGGC---UCGU-CuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 17275 0.69 0.528714
Target:  5'- cGCUGGgcUGCUGCgCGGGCAGGggcgucgCGGuCGGa -3'
miRNA:   3'- -CGACU--AUGGCG-GCUCGUCUa------GCC-GCU- -5'
24092 3' -55.8 NC_005262.1 + 24724 0.69 0.528714
Target:  5'- aGCUGAUcgcGCUGgCGcGCGcGAUCGGCGu -3'
miRNA:   3'- -CGACUA---UGGCgGCuCGU-CUAGCCGCu -5'
24092 3' -55.8 NC_005262.1 + 52298 0.7 0.508006
Target:  5'- --cGAUGCaGCCGAGC---UCGGCGAc -3'
miRNA:   3'- cgaCUAUGgCGGCUCGucuAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 5146 0.7 0.477616
Target:  5'- cGCUGAUcCUGCuCGGcgcGCuGAUCGGUGAc -3'
miRNA:   3'- -CGACUAuGGCG-GCU---CGuCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 14258 0.7 0.471645
Target:  5'- uGCUGGaGCgCGCucugcggcagcuccuCGAGCAGGcccUCGGCGAu -3'
miRNA:   3'- -CGACUaUG-GCG---------------GCUCGUCU---AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 53135 0.7 0.467685
Target:  5'- cGC-GAUGCCGCgCGAGUucuucGAcgCGGCGAu -3'
miRNA:   3'- -CGaCUAUGGCG-GCUCGu----CUa-GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 51297 0.7 0.467685
Target:  5'- uGCUGcgcAUGCCGCuCGAcCAGAUgGGCGc -3'
miRNA:   3'- -CGAC---UAUGGCG-GCUcGUCUAgCCGCu -5'
24092 3' -55.8 NC_005262.1 + 7613 0.71 0.438554
Target:  5'- --gGAUGCCGCauGGUAG-UCGGCGAu -3'
miRNA:   3'- cgaCUAUGGCGgcUCGUCuAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 52222 0.71 0.429076
Target:  5'- cGCUGGccGCCGCCGgcauAGCAGcgCGcGUGAu -3'
miRNA:   3'- -CGACUa-UGGCGGC----UCGUCuaGC-CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.