miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 5' -52.7 NC_005262.1 + 46298 0.68 0.78052
Target:  5'- -cUgCCGAUCGacgcGUcgCgCGCGGCGCGCg -3'
miRNA:   3'- gaAgGGCUAGUa---CAa-G-GUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 11928 0.69 0.760283
Target:  5'- --gCUCGGUCGUGcucgcgucgUUCGCGGCGcCGCg -3'
miRNA:   3'- gaaGGGCUAGUACa--------AGGUGCCGU-GCG- -5'
24092 5' -52.7 NC_005262.1 + 29201 0.69 0.739521
Target:  5'- --gCUCGAucUCGUGgaUCACGGCGcCGCa -3'
miRNA:   3'- gaaGGGCU--AGUACaaGGUGCCGU-GCG- -5'
24092 5' -52.7 NC_005262.1 + 21203 0.69 0.728971
Target:  5'- ---gCCGGUCAgGUcgUCCgGCGGCGCGUu -3'
miRNA:   3'- gaagGGCUAGUaCA--AGG-UGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 35492 0.69 0.728971
Target:  5'- --cCUCGAUCAUGcgCaCGCGcuuGCGCGCa -3'
miRNA:   3'- gaaGGGCUAGUACaaG-GUGC---CGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 10445 0.69 0.722593
Target:  5'- ---gCCGAUCAgGUUCgCgcggucggcgagguaGCGGCGCGCg -3'
miRNA:   3'- gaagGGCUAGUaCAAG-G---------------UGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 36783 0.71 0.631009
Target:  5'- --cUUCGAUCAUGgucaUUCCuccaguGCGGCGCGCu -3'
miRNA:   3'- gaaGGGCUAGUAC----AAGG------UGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 34480 0.71 0.6266
Target:  5'- -gUCCUGAUCcgGgucuuucuggccgUUCACGGCGCGg -3'
miRNA:   3'- gaAGGGCUAGuaCa------------AGGUGCCGUGCg -5'
24092 5' -52.7 NC_005262.1 + 37103 0.71 0.597993
Target:  5'- ---aCCGAUCGggccggCCACGGCACuGCa -3'
miRNA:   3'- gaagGGCUAGUacaa--GGUGCCGUG-CG- -5'
24092 5' -52.7 NC_005262.1 + 53221 0.68 0.790413
Target:  5'- ---gCCGcgC-UGcUCCGCGGUACGCu -3'
miRNA:   3'- gaagGGCuaGuACaAGGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 6444 0.68 0.809691
Target:  5'- -gUCCagGAgcUCAgccUGUUCCgggaACGGCGCGCc -3'
miRNA:   3'- gaAGGg-CU--AGU---ACAAGG----UGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 14355 0.67 0.819055
Target:  5'- cCUUCUCGGUCAcGaucUUCGCGaGUGCGCg -3'
miRNA:   3'- -GAAGGGCUAGUaCa--AGGUGC-CGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 57857 0.66 0.893396
Target:  5'- gUUCCgCGAgaagC-UGaaCCGCGGCAuCGCg -3'
miRNA:   3'- gAAGG-GCUa---GuACaaGGUGCCGU-GCG- -5'
24092 5' -52.7 NC_005262.1 + 37696 0.66 0.893396
Target:  5'- -gUCCCaGAagGUGaagCACGGCACGUu -3'
miRNA:   3'- gaAGGG-CUagUACaagGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 19383 0.66 0.893396
Target:  5'- -gUCgCC-AUCGUGU---GCGGCGCGCg -3'
miRNA:   3'- gaAG-GGcUAGUACAaggUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 8813 0.66 0.893396
Target:  5'- cCUUCCUGA--AUGccgcgCCAgaUGGCGCGCu -3'
miRNA:   3'- -GAAGGGCUagUACaa---GGU--GCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 17071 0.66 0.873925
Target:  5'- --aUCCGGUCGUGccggauugcgccggcUugUCCACuGCGCGCg -3'
miRNA:   3'- gaaGGGCUAGUAC---------------A--AGGUGcCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 35054 0.67 0.845927
Target:  5'- uCUUCaCGGUCAUcacGgcgUCCG-GGCGCGCg -3'
miRNA:   3'- -GAAGgGCUAGUA---Ca--AGGUgCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 58293 0.67 0.828222
Target:  5'- -aUCCCGGUCcgGUcgUCGCGGCcuACa- -3'
miRNA:   3'- gaAGGGCUAGuaCAa-GGUGCCG--UGcg -5'
24092 5' -52.7 NC_005262.1 + 57649 0.67 0.819055
Target:  5'- -aUCUCGAUCAgcaaaaUCC-CGGcCGCGCa -3'
miRNA:   3'- gaAGGGCUAGUaca---AGGuGCC-GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.