miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 5' -52.7 NC_005262.1 + 57096 1.13 0.001288
Target:  5'- gCUUCCCGAUCAUGUUCCACGGCACGCa -3'
miRNA:   3'- -GAAGGGCUAGUACAAGGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 26035 0.67 0.845927
Target:  5'- --gCCCag-CAgcucgCCGCGGCGCGCa -3'
miRNA:   3'- gaaGGGcuaGUacaa-GGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 49408 0.67 0.845927
Target:  5'- ---aCUGGUC-UGUUCgGCGGCAUGg -3'
miRNA:   3'- gaagGGCUAGuACAAGgUGCCGUGCg -5'
24092 5' -52.7 NC_005262.1 + 19669 0.67 0.854446
Target:  5'- aCUUCUcgcuuuugaaagCGAUUAcGUUCCGCaGCGCGUc -3'
miRNA:   3'- -GAAGG------------GCUAGUaCAAGGUGcCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 38787 0.67 0.854446
Target:  5'- gUUCgaGAUCAUGcgcUgCACGGCGCGa -3'
miRNA:   3'- gAAGggCUAGUACa--AgGUGCCGUGCg -5'
24092 5' -52.7 NC_005262.1 + 40462 0.67 0.854446
Target:  5'- -aUCCCGGccgugCAUGggCCG-GGCugGUa -3'
miRNA:   3'- gaAGGGCUa----GUACaaGGUgCCGugCG- -5'
24092 5' -52.7 NC_005262.1 + 5053 0.66 0.893396
Target:  5'- --gCCUGAUCGgcgGgcaggcCCGCGGCggcgGCGCg -3'
miRNA:   3'- gaaGGGCUAGUa--Caa----GGUGCCG----UGCG- -5'
24092 5' -52.7 NC_005262.1 + 53893 0.66 0.893396
Target:  5'- gUUCCUGAagUCGUGgacgggUCUGCGcGaCGCGCu -3'
miRNA:   3'- gAAGGGCU--AGUACa-----AGGUGC-C-GUGCG- -5'
24092 5' -52.7 NC_005262.1 + 37386 0.66 0.900413
Target:  5'- --aCCCGAUCcUGUgggCCuauaaGCGCGCg -3'
miRNA:   3'- gaaGGGCUAGuACAa--GGugc--CGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 61638 0.67 0.837183
Target:  5'- --gCUCGAgggCGaggaggaagugcUGUaCCGCGGCGCGCu -3'
miRNA:   3'- gaaGGGCUa--GU------------ACAaGGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 53555 0.67 0.819055
Target:  5'- --cCCCGAgaUgGUGcUCgGCGcGCACGCg -3'
miRNA:   3'- gaaGGGCU--AgUACaAGgUGC-CGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 7519 0.68 0.80014
Target:  5'- -aUCCauCGggCAgGUUCgGCGGCGCGUc -3'
miRNA:   3'- gaAGG--GCuaGUaCAAGgUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 12299 0.78 0.266499
Target:  5'- uUUCUCGGcaaCGUGUUCgACGGCAUGCg -3'
miRNA:   3'- gAAGGGCUa--GUACAAGgUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 62085 0.73 0.501381
Target:  5'- gCUUCUCGAccUCAUGcgucgccgCCGCGGCAacCGCg -3'
miRNA:   3'- -GAAGGGCU--AGUACaa------GGUGCCGU--GCG- -5'
24092 5' -52.7 NC_005262.1 + 41114 0.73 0.511823
Target:  5'- -gUCgaGAUCGUGcgcgUCACGGCGCGCu -3'
miRNA:   3'- gaAGggCUAGUACaa--GGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 51400 0.71 0.597993
Target:  5'- --gCCUGAcCGUGUgcaccgcgugcUCgGCGGCGCGCg -3'
miRNA:   3'- gaaGGGCUaGUACA-----------AGgUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 24457 0.71 0.608981
Target:  5'- --gCCCGAUCgAUGgcgcUgCACGGCACGa -3'
miRNA:   3'- gaaGGGCUAG-UACa---AgGUGCCGUGCg -5'
24092 5' -52.7 NC_005262.1 + 32073 0.69 0.760283
Target:  5'- -gUCCCGGUCAgcaUCgACGGCgACGa -3'
miRNA:   3'- gaAGGGCUAGUacaAGgUGCCG-UGCg -5'
24092 5' -52.7 NC_005262.1 + 49817 0.68 0.779522
Target:  5'- --gCCCGAUCGg---CCGCGcgauggaGCGCGCg -3'
miRNA:   3'- gaaGGGCUAGUacaaGGUGC-------CGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 42171 0.68 0.80014
Target:  5'- ---gCCGAUCGucuguacgugaUGggCgACGGCGCGCc -3'
miRNA:   3'- gaagGGCUAGU-----------ACaaGgUGCCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.