miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 5' -52.7 NC_005262.1 + 5052 0.74 0.447743
Target:  5'- aCUgCUCGAUCGUGUaggcgccgaauuccUCCGCGGUcaGCGCc -3'
miRNA:   3'- -GAaGGGCUAGUACA--------------AGGUGCCG--UGCG- -5'
24092 5' -52.7 NC_005262.1 + 5053 0.66 0.893396
Target:  5'- --gCCUGAUCGgcgGgcaggcCCGCGGCggcgGCGCg -3'
miRNA:   3'- gaaGGGCUAGUa--Caa----GGUGCCG----UGCG- -5'
24092 5' -52.7 NC_005262.1 + 6444 0.68 0.809691
Target:  5'- -gUCCagGAgcUCAgccUGUUCCgggaACGGCGCGCc -3'
miRNA:   3'- gaAGGg-CU--AGU---ACAAGG----UGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 7519 0.68 0.80014
Target:  5'- -aUCCauCGggCAgGUUCgGCGGCGCGUc -3'
miRNA:   3'- gaAGG--GCuaGUaCAAGgUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 8813 0.66 0.893396
Target:  5'- cCUUCCUGA--AUGccgcgCCAgaUGGCGCGCu -3'
miRNA:   3'- -GAAGGGCUagUACaa---GGU--GCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 9492 0.71 0.597993
Target:  5'- -gUCCUGGcggcUCAUGUUCgAgaGGCGCGCc -3'
miRNA:   3'- gaAGGGCU----AGUACAAGgUg-CCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 10445 0.69 0.722593
Target:  5'- ---gCCGAUCAgGUUCgCgcggucggcgagguaGCGGCGCGCg -3'
miRNA:   3'- gaagGGCUAGUaCAAG-G---------------UGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 11928 0.69 0.760283
Target:  5'- --gCUCGGUCGUGcucgcgucgUUCGCGGCGcCGCg -3'
miRNA:   3'- gaaGGGCUAGUACa--------AGGUGCCGU-GCG- -5'
24092 5' -52.7 NC_005262.1 + 12299 0.78 0.266499
Target:  5'- uUUCUCGGcaaCGUGUUCgACGGCAUGCg -3'
miRNA:   3'- gAAGGGCUa--GUACAAGgUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 14355 0.67 0.819055
Target:  5'- cCUUCUCGGUCAcGaucUUCGCGaGUGCGCg -3'
miRNA:   3'- -GAAGGGCUAGUaCa--AGGUGC-CGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 17071 0.66 0.873925
Target:  5'- --aUCCGGUCGUGccggauugcgccggcUugUCCACuGCGCGCg -3'
miRNA:   3'- gaaGGGCUAGUAC---------------A--AGGUGcCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 18143 0.66 0.900413
Target:  5'- --gCUCGAUC-UGUUCgACGaGCucGCGCg -3'
miRNA:   3'- gaaGGGCUAGuACAAGgUGC-CG--UGCG- -5'
24092 5' -52.7 NC_005262.1 + 19383 0.66 0.893396
Target:  5'- -gUCgCC-AUCGUGU---GCGGCGCGCg -3'
miRNA:   3'- gaAG-GGcUAGUACAaggUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 19669 0.67 0.854446
Target:  5'- aCUUCUcgcuuuugaaagCGAUUAcGUUCCGCaGCGCGUc -3'
miRNA:   3'- -GAAGG------------GCUAGUaCAAGGUGcCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 20710 0.78 0.276172
Target:  5'- uCUUgCCCGGUCAgGUcgaugaugaagcugCCGCGGCGCGCg -3'
miRNA:   3'- -GAA-GGGCUAGUaCAa-------------GGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 21203 0.69 0.728971
Target:  5'- ---gCCGGUCAgGUcgUCCgGCGGCGCGUu -3'
miRNA:   3'- gaagGGCUAGUaCA--AGG-UGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 24457 0.71 0.608981
Target:  5'- --gCCCGAUCgAUGgcgcUgCACGGCACGa -3'
miRNA:   3'- gaaGGGCUAG-UACa---AgGUGCCGUGCg -5'
24092 5' -52.7 NC_005262.1 + 25917 0.73 0.511823
Target:  5'- aCUUCCCGccCGUGccUCCG-GGCGCGCc -3'
miRNA:   3'- -GAAGGGCuaGUACa-AGGUgCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 26035 0.67 0.845927
Target:  5'- --gCCCag-CAgcucgCCGCGGCGCGCa -3'
miRNA:   3'- gaaGGGcuaGUacaa-GGUGCCGUGCG- -5'
24092 5' -52.7 NC_005262.1 + 29201 0.69 0.739521
Target:  5'- --gCUCGAucUCGUGgaUCACGGCGcCGCa -3'
miRNA:   3'- gaaGGGCU--AGUACaaGGUGCCGU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.