Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24092 | 5' | -52.7 | NC_005262.1 | + | 57096 | 1.13 | 0.001288 |
Target: 5'- gCUUCCCGAUCAUGUUCCACGGCACGCa -3' miRNA: 3'- -GAAGGGCUAGUACAAGGUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 12299 | 0.78 | 0.266499 |
Target: 5'- uUUCUCGGcaaCGUGUUCgACGGCAUGCg -3' miRNA: 3'- gAAGGGCUa--GUACAAGgUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 20710 | 0.78 | 0.276172 |
Target: 5'- uCUUgCCCGGUCAgGUcgaugaugaagcugCCGCGGCGCGCg -3' miRNA: 3'- -GAA-GGGCUAGUaCAa-------------GGUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 5052 | 0.74 | 0.447743 |
Target: 5'- aCUgCUCGAUCGUGUaggcgccgaauuccUCCGCGGUcaGCGCc -3' miRNA: 3'- -GAaGGGCUAGUACA--------------AGGUGCCG--UGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 62085 | 0.73 | 0.501381 |
Target: 5'- gCUUCUCGAccUCAUGcgucgccgCCGCGGCAacCGCg -3' miRNA: 3'- -GAAGGGCU--AGUACaa------GGUGCCGU--GCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 36333 | 0.73 | 0.505547 |
Target: 5'- gUUCCCGGUgCGUGcgCCGucaggcuugaucgauCGGCACGUg -3' miRNA: 3'- gAAGGGCUA-GUACaaGGU---------------GCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 41114 | 0.73 | 0.511823 |
Target: 5'- -gUCgaGAUCGUGcgcgUCACGGCGCGCu -3' miRNA: 3'- gaAGggCUAGUACaa--GGUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 25917 | 0.73 | 0.511823 |
Target: 5'- aCUUCCCGccCGUGccUCCG-GGCGCGCc -3' miRNA: 3'- -GAAGGGCuaGUACa-AGGUgCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 59123 | 0.72 | 0.587033 |
Target: 5'- --gCCCGAUCcgG--CCGCGGCAUGg -3' miRNA: 3'- gaaGGGCUAGuaCaaGGUGCCGUGCg -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 37103 | 0.71 | 0.597993 |
Target: 5'- ---aCCGAUCGggccggCCACGGCACuGCa -3' miRNA: 3'- gaagGGCUAGUacaa--GGUGCCGUG-CG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 9492 | 0.71 | 0.597993 |
Target: 5'- -gUCCUGGcggcUCAUGUUCgAgaGGCGCGCc -3' miRNA: 3'- gaAGGGCU----AGUACAAGgUg-CCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 51400 | 0.71 | 0.597993 |
Target: 5'- --gCCUGAcCGUGUgcaccgcgugcUCgGCGGCGCGCg -3' miRNA: 3'- gaaGGGCUaGUACA-----------AGgUGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 24457 | 0.71 | 0.608981 |
Target: 5'- --gCCCGAUCgAUGgcgcUgCACGGCACGa -3' miRNA: 3'- gaaGGGCUAG-UACa---AgGUGCCGUGCg -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 34480 | 0.71 | 0.6266 |
Target: 5'- -gUCCUGAUCcgGgucuuucuggccgUUCACGGCGCGg -3' miRNA: 3'- gaAGGGCUAGuaCa------------AGGUGCCGUGCg -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 36783 | 0.71 | 0.631009 |
Target: 5'- --cUUCGAUCAUGgucaUUCCuccaguGCGGCGCGCu -3' miRNA: 3'- gaaGGGCUAGUAC----AAGG------UGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 10445 | 0.69 | 0.722593 |
Target: 5'- ---gCCGAUCAgGUUCgCgcggucggcgagguaGCGGCGCGCg -3' miRNA: 3'- gaagGGCUAGUaCAAG-G---------------UGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 21203 | 0.69 | 0.728971 |
Target: 5'- ---gCCGGUCAgGUcgUCCgGCGGCGCGUu -3' miRNA: 3'- gaagGGCUAGUaCA--AGG-UGCCGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 35492 | 0.69 | 0.728971 |
Target: 5'- --cCUCGAUCAUGcgCaCGCGcuuGCGCGCa -3' miRNA: 3'- gaaGGGCUAGUACaaG-GUGC---CGUGCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 29201 | 0.69 | 0.739521 |
Target: 5'- --gCUCGAucUCGUGgaUCACGGCGcCGCa -3' miRNA: 3'- gaaGGGCU--AGUACaaGGUGCCGU-GCG- -5' |
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24092 | 5' | -52.7 | NC_005262.1 | + | 32073 | 0.69 | 0.760283 |
Target: 5'- -gUCCCGGUCAgcaUCgACGGCgACGa -3' miRNA: 3'- gaAGGGCUAGUacaAGgUGCCG-UGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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