miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 13708 0.68 0.347948
Target:  5'- aGgUCGAagugCCuGACgUGCUGGUCGGUg -3'
miRNA:   3'- gCgAGCUg---GGcCUGgACGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 13771 0.71 0.201259
Target:  5'- gCGC-CGGCUCGGGCUUcacuucggugggcGCCGGcgCGGCu -3'
miRNA:   3'- -GCGaGCUGGGCCUGGA-------------CGGCCa-GCCG- -5'
24093 3' -62.5 NC_005262.1 + 13851 0.66 0.43163
Target:  5'- gGCUCGAacgucacgccaUCCGGGCCgGUC-GUCaGGCg -3'
miRNA:   3'- gCGAGCU-----------GGGCCUGGaCGGcCAG-CCG- -5'
24093 3' -62.5 NC_005262.1 + 14459 0.66 0.449731
Target:  5'- aGCgCGGCgCGcGCCUGCUcGUCGGUc -3'
miRNA:   3'- gCGaGCUGgGCcUGGACGGcCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 15742 0.68 0.324469
Target:  5'- uCGCUgaGAacuUCUGGAcgaagcaCCUGCCGGcCGGCg -3'
miRNA:   3'- -GCGAg-CU---GGGCCU-------GGACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 15957 0.77 0.0837
Target:  5'- aCGCUCGGCuuCCGGucgACCUGCUGGcgaucgacgagaUCGGCg -3'
miRNA:   3'- -GCGAGCUG--GGCC---UGGACGGCC------------AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 16039 0.69 0.276512
Target:  5'- cCGCgCGAUgCCGGguucGCCgcgGCCGG-CGGCg -3'
miRNA:   3'- -GCGaGCUG-GGCC----UGGa--CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 17063 0.69 0.283096
Target:  5'- gGCgaUCGAUCCGGuCgUGCCGGauugcgcCGGCu -3'
miRNA:   3'- gCG--AGCUGGGCCuGgACGGCCa------GCCG- -5'
24093 3' -62.5 NC_005262.1 + 18937 0.67 0.388312
Target:  5'- aGCgUGAUUCGGAugucguCCaugGCCGGUUGGCc -3'
miRNA:   3'- gCGaGCUGGGCCU------GGa--CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 19012 0.68 0.317877
Target:  5'- aGCUCGucgaGCUCGG-CCUGCCGcGcgcUGGCg -3'
miRNA:   3'- gCGAGC----UGGGCCuGGACGGC-Ca--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 22217 0.69 0.270051
Target:  5'- gCGCUCGACaagcucaCGGccgcGCCgcccacGCCGGcCGGCc -3'
miRNA:   3'- -GCGAGCUGg------GCC----UGGa-----CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 23344 0.69 0.263712
Target:  5'- gCGCUCGACCaCGG-CCggcgugaagcGCgCGG-CGGCg -3'
miRNA:   3'- -GCGAGCUGG-GCCuGGa---------CG-GCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 25341 0.7 0.259967
Target:  5'- gGCUCGACCaCGcGCUguucaacgccaacaGCCGGUgCGGCa -3'
miRNA:   3'- gCGAGCUGG-GCcUGGa-------------CGGCCA-GCCG- -5'
24093 3' -62.5 NC_005262.1 + 25640 0.67 0.396745
Target:  5'- gGCUCcauCCCGG-CCgUGCCGaaGUCGGg -3'
miRNA:   3'- gCGAGcu-GGGCCuGG-ACGGC--CAGCCg -5'
24093 3' -62.5 NC_005262.1 + 27338 0.69 0.295259
Target:  5'- uGCUCGaccucaucaagauGCCCGagaacccGACCgagGCCGucGUCGGCg -3'
miRNA:   3'- gCGAGC-------------UGGGC-------CUGGa--CGGC--CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 28083 0.67 0.371802
Target:  5'- gGCUCGACauGGACgaCUGCCGGUa--- -3'
miRNA:   3'- gCGAGCUGggCCUG--GACGGCCAgccg -5'
24093 3' -62.5 NC_005262.1 + 28837 0.72 0.178029
Target:  5'- gCGCUCGAUCCaGAugauCCaGCaGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGGGcCU----GGaCGgCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 29199 0.66 0.43163
Target:  5'- cCGCUCGAUCUcguGGAUCacggcGCCGcaCGGCg -3'
miRNA:   3'- -GCGAGCUGGG---CCUGGa----CGGCcaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 29945 0.71 0.196803
Target:  5'- aGgaCGACCCGGACgCgGgCGG-CGGCg -3'
miRNA:   3'- gCgaGCUGGGCCUG-GaCgGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 30099 0.66 0.42274
Target:  5'- uGUuggCGGCCgGGACCuUGCCGaauUUGGCc -3'
miRNA:   3'- gCGa--GCUGGgCCUGG-ACGGCc--AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.