miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 178 0.68 0.340244
Target:  5'- aGUUCGGCUCGGACggCUucaugguccacGCCGGcgggggCGGCg -3'
miRNA:   3'- gCGAGCUGGGCCUG--GA-----------CGGCCa-----GCCG- -5'
24093 3' -62.5 NC_005262.1 + 2787 0.69 0.296635
Target:  5'- aCGuCUCGGCgaGcGGCUUGaugaCGGUCGGCa -3'
miRNA:   3'- -GC-GAGCUGggC-CUGGACg---GCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 3586 0.66 0.42274
Target:  5'- aGCUUG-CC--GACCUcGCCGGcCGGCu -3'
miRNA:   3'- gCGAGCuGGgcCUGGA-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 4660 0.7 0.228192
Target:  5'- gCGCggCGACgCGGcCCgGCCGGuucgccUCGGCg -3'
miRNA:   3'- -GCGa-GCUGgGCCuGGaCGGCC------AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 4885 0.68 0.332663
Target:  5'- gCGC-CGACUC-GACCUGCU--UCGGCg -3'
miRNA:   3'- -GCGaGCUGGGcCUGGACGGccAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 5095 0.68 0.317877
Target:  5'- gGCUCGgcggugcgcGCCCGGuucacgauGCCUGCCaugcgcgacGGgCGGCg -3'
miRNA:   3'- gCGAGC---------UGGGCC--------UGGACGG---------CCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 5168 0.66 0.43163
Target:  5'- cCGCUCGACugCCGaGCCUGaCGGUgCaGCg -3'
miRNA:   3'- -GCGAGCUG--GGCcUGGACgGCCA-GcCG- -5'
24093 3' -62.5 NC_005262.1 + 7001 0.67 0.363728
Target:  5'- cCGCUCGACgUCGG-CCUucagGCCGGcCaGCu -3'
miRNA:   3'- -GCGAGCUG-GGCCuGGA----CGGCCaGcCG- -5'
24093 3' -62.5 NC_005262.1 + 7040 0.67 0.379997
Target:  5'- gCGCUCGucGCCCGacGCCaGCgCGG-CGGCc -3'
miRNA:   3'- -GCGAGC--UGGGCc-UGGaCG-GCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 7982 0.66 0.413961
Target:  5'- gCGCUcaCGACCuCGuaGCC-GCCGG-CGGCg -3'
miRNA:   3'- -GCGA--GCUGG-GCc-UGGaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 8136 0.67 0.379997
Target:  5'- uGUUCGugaCCGG-CgUGCCGGacgCGGCc -3'
miRNA:   3'- gCGAGCug-GGCCuGgACGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 9121 0.72 0.178029
Target:  5'- cCGCagCGGCUaugaGGACCggcgccggGCCGGUCGGa -3'
miRNA:   3'- -GCGa-GCUGGg---CCUGGa-------CGGCCAGCCg -5'
24093 3' -62.5 NC_005262.1 + 9161 0.67 0.355777
Target:  5'- aGUUCGAgCCGGA-CUGCuCGG-CGGa -3'
miRNA:   3'- gCGAGCUgGGCCUgGACG-GCCaGCCg -5'
24093 3' -62.5 NC_005262.1 + 9984 0.67 0.371802
Target:  5'- aGCUCGauGCCCGugccgcugucGACCUGCaucaGGUugcCGGUa -3'
miRNA:   3'- gCGAGC--UGGGC----------CUGGACGg---CCA---GCCG- -5'
24093 3' -62.5 NC_005262.1 + 11124 0.69 0.296635
Target:  5'- uGCaaCGACCCGGACUU-CUGGgcgUGGCu -3'
miRNA:   3'- gCGa-GCUGGGCCUGGAcGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 12312 0.68 0.317877
Target:  5'- cCGCUCGAUCUcguaGGACUgGCCGcccUUGGCg -3'
miRNA:   3'- -GCGAGCUGGG----CCUGGaCGGCc--AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12602 0.68 0.340244
Target:  5'- cCGCgCGGCUccagCGGGCC-GCCGcgucGUCGGCu -3'
miRNA:   3'- -GCGaGCUGG----GCCUGGaCGGC----CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12817 0.67 0.371802
Target:  5'- uGCUCGACcuucuCCGGcgagaacucgGCCUGC--GUCGGCu -3'
miRNA:   3'- gCGAGCUG-----GGCC----------UGGACGgcCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 12889 0.67 0.379997
Target:  5'- aCGCUCGugcgcaucaGCCCcGGCCUGCUGGaCGa- -3'
miRNA:   3'- -GCGAGC---------UGGGcCUGGACGGCCaGCcg -5'
24093 3' -62.5 NC_005262.1 + 13688 0.67 0.377526
Target:  5'- gCGCUCGGCCggcuucuguucgcgCGGcGCggGuUCGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGG--------------GCC-UGgaC-GGCCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.