Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24093 | 3' | -62.5 | NC_005262.1 | + | 57200 | 1.11 | 0.000213 |
Target: 5'- cCGCUCGACCCGGACCUGCCGGUCGGCg -3' miRNA: 3'- -GCGAGCUGGGCCUGGACGGCCAGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 15957 | 0.77 | 0.0837 |
Target: 5'- aCGCUCGGCuuCCGGucgACCUGCUGGcgaucgacgagaUCGGCg -3' miRNA: 3'- -GCGAGCUG--GGCC---UGGACGGCC------------AGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 34090 | 0.76 | 0.098154 |
Target: 5'- uGCUUGGCCCGGugCgGgCGGUUGcGCa -3' miRNA: 3'- gCGAGCUGGGCCugGaCgGCCAGC-CG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 52943 | 0.72 | 0.17359 |
Target: 5'- gCGC-CG-CCUGGGCUUcGCCGG-CGGCa -3' miRNA: 3'- -GCGaGCuGGGCCUGGA-CGGCCaGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 28837 | 0.72 | 0.178029 |
Target: 5'- gCGCUCGAUCCaGAugauCCaGCaGGUCGGCg -3' miRNA: 3'- -GCGAGCUGGGcCU----GGaCGgCCAGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 9121 | 0.72 | 0.178029 |
Target: 5'- cCGCagCGGCUaugaGGACCggcgccggGCCGGUCGGa -3' miRNA: 3'- -GCGa-GCUGGg---CCUGGa-------CGGCCAGCCg -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 30154 | 0.72 | 0.182568 |
Target: 5'- gCGCUCGucaGCCuCGGAcaCCUgcGCCGG-CGGCu -3' miRNA: 3'- -GCGAGC---UGG-GCCU--GGA--CGGCCaGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 29945 | 0.71 | 0.196803 |
Target: 5'- aGgaCGACCCGGACgCgGgCGG-CGGCg -3' miRNA: 3'- gCgaGCUGGGCCUG-GaCgGCCaGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 48342 | 0.71 | 0.196803 |
Target: 5'- aGCUcggcacgacCGACCCGG-CgCUGCUGG-CGGCc -3' miRNA: 3'- gCGA---------GCUGGGCCuG-GACGGCCaGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 13771 | 0.71 | 0.201259 |
Target: 5'- gCGC-CGGCUCGGGCUUcacuucggugggcGCCGGcgCGGCu -3' miRNA: 3'- -GCGaGCUGGGCCUGGA-------------CGGCCa-GCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 35156 | 0.71 | 0.20176 |
Target: 5'- cCGC-CGAUCCGGGCgacGCUGG-CGGCa -3' miRNA: 3'- -GCGaGCUGGGCCUGga-CGGCCaGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 59977 | 0.71 | 0.206824 |
Target: 5'- gCGCUCGGCaccuuccuCCGGGCCgucgaggaugGCCGGguuccgacCGGCu -3' miRNA: 3'- -GCGAGCUG--------GGCCUGGa---------CGGCCa-------GCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 43824 | 0.71 | 0.211998 |
Target: 5'- gGCgacaCGGCCgCGGGCCgGCCGcGcgCGGCg -3' miRNA: 3'- gCGa---GCUGG-GCCUGGaCGGC-Ca-GCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 60179 | 0.71 | 0.222681 |
Target: 5'- gCGCUCGGCCagugggCGGcaACCggcaaggaGCCGGcCGGCg -3' miRNA: 3'- -GCGAGCUGG------GCC--UGGa-------CGGCCaGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 4660 | 0.7 | 0.228192 |
Target: 5'- gCGCggCGACgCGGcCCgGCCGGuucgccUCGGCg -3' miRNA: 3'- -GCGa-GCUGgGCCuGGaCGGCC------AGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 31915 | 0.7 | 0.228192 |
Target: 5'- cCGCUCGACgcgCCGGAcgucgccaCCUGCUGuaCGGCg -3' miRNA: 3'- -GCGAGCUG---GGCCU--------GGACGGCcaGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 63284 | 0.7 | 0.251397 |
Target: 5'- uGCUUGACggCCGG--CUGCUGGcUCGGCg -3' miRNA: 3'- gCGAGCUG--GGCCugGACGGCC-AGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 25341 | 0.7 | 0.259967 |
Target: 5'- gGCUCGACCaCGcGCUguucaacgccaacaGCCGGUgCGGCa -3' miRNA: 3'- gCGAGCUGG-GCcUGGa-------------CGGCCA-GCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 58734 | 0.7 | 0.259967 |
Target: 5'- gCGC-CGccGCCgCGGGCCUgcccgccgaucaggcGCCGGcCGGCg -3' miRNA: 3'- -GCGaGC--UGG-GCCUGGA---------------CGGCCaGCCG- -5' |
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24093 | 3' | -62.5 | NC_005262.1 | + | 23344 | 0.69 | 0.263712 |
Target: 5'- gCGCUCGACCaCGG-CCggcgugaagcGCgCGG-CGGCg -3' miRNA: 3'- -GCGAGCUGG-GCCuGGa---------CG-GCCaGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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