miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 45229 0.68 0.303591
Target:  5'- gGCUCGGCCUGaAC--GCCGGcaacUCGGCg -3'
miRNA:   3'- gCGAGCUGGGCcUGgaCGGCC----AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 25341 0.7 0.259967
Target:  5'- gGCUCGACCaCGcGCUguucaacgccaacaGCCGGUgCGGCa -3'
miRNA:   3'- gCGAGCUGG-GCcUGGa-------------CGGCCA-GCCG- -5'
24093 3' -62.5 NC_005262.1 + 23344 0.69 0.263712
Target:  5'- gCGCUCGACCaCGG-CCggcgugaagcGCgCGG-CGGCg -3'
miRNA:   3'- -GCGAGCUGG-GCCuGGa---------CG-GCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 22217 0.69 0.270051
Target:  5'- gCGCUCGACaagcucaCGGccgcGCCgcccacGCCGGcCGGCc -3'
miRNA:   3'- -GCGAGCUGg------GCC----UGGa-----CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 48576 0.69 0.276512
Target:  5'- uGCUCGACCCGaacgaaGCgaGCCGccUCGGCc -3'
miRNA:   3'- gCGAGCUGGGCc-----UGgaCGGCc-AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 49841 0.69 0.276512
Target:  5'- gCGCgaaUGGCCCGG---UGCCGG-CGGCg -3'
miRNA:   3'- -GCGa--GCUGGGCCuggACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 60976 0.69 0.276512
Target:  5'- uCGCUCGAUgCGuuCCUGUCGGcCGuGCc -3'
miRNA:   3'- -GCGAGCUGgGCcuGGACGGCCaGC-CG- -5'
24093 3' -62.5 NC_005262.1 + 27338 0.69 0.295259
Target:  5'- uGCUCGaccucaucaagauGCCCGagaacccGACCgagGCCGucGUCGGCg -3'
miRNA:   3'- gCGAGC-------------UGGGC-------CUGGa--CGGC--CAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 11124 0.69 0.296635
Target:  5'- uGCaaCGACCCGGACUU-CUGGgcgUGGCu -3'
miRNA:   3'- gCGa-GCUGGGCCUGGAcGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 63284 0.7 0.251397
Target:  5'- uGCUUGACggCCGG--CUGCUGGcUCGGCg -3'
miRNA:   3'- gCGAGCUG--GGCCugGACGGCC-AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 31915 0.7 0.228192
Target:  5'- cCGCUCGACgcgCCGGAcgucgccaCCUGCUGuaCGGCg -3'
miRNA:   3'- -GCGAGCUG---GGCCU--------GGACGGCcaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 60179 0.71 0.222681
Target:  5'- gCGCUCGGCCagugggCGGcaACCggcaaggaGCCGGcCGGCg -3'
miRNA:   3'- -GCGAGCUGG------GCC--UGGa-------CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 15957 0.77 0.0837
Target:  5'- aCGCUCGGCuuCCGGucgACCUGCUGGcgaucgacgagaUCGGCg -3'
miRNA:   3'- -GCGAGCUG--GGCC---UGGACGGCC------------AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 52943 0.72 0.17359
Target:  5'- gCGC-CG-CCUGGGCUUcGCCGG-CGGCa -3'
miRNA:   3'- -GCGaGCuGGGCCUGGA-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 28837 0.72 0.178029
Target:  5'- gCGCUCGAUCCaGAugauCCaGCaGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGGGcCU----GGaCGgCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 9121 0.72 0.178029
Target:  5'- cCGCagCGGCUaugaGGACCggcgccggGCCGGUCGGa -3'
miRNA:   3'- -GCGa-GCUGGg---CCUGGa-------CGGCCAGCCg -5'
24093 3' -62.5 NC_005262.1 + 29945 0.71 0.196803
Target:  5'- aGgaCGACCCGGACgCgGgCGG-CGGCg -3'
miRNA:   3'- gCgaGCUGGGCCUG-GaCgGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 48342 0.71 0.196803
Target:  5'- aGCUcggcacgacCGACCCGG-CgCUGCUGG-CGGCc -3'
miRNA:   3'- gCGA---------GCUGGGCCuG-GACGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 35156 0.71 0.20176
Target:  5'- cCGC-CGAUCCGGGCgacGCUGG-CGGCa -3'
miRNA:   3'- -GCGaGCUGGGCCUGga-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 43824 0.71 0.211998
Target:  5'- gGCgacaCGGCCgCGGGCCgGCCGcGcgCGGCg -3'
miRNA:   3'- gCGa---GCUGG-GCCUGGaCGGC-Ca-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.