miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 5' -56.4 NC_005262.1 + 11654 0.69 0.483456
Target:  5'- uUGCGCGCCGCCucccagaacgacagCAGGUaGGGCu- -3'
miRNA:   3'- uGCGCGCGGCGGuua-----------GUCCA-CUUGuu -5'
24093 5' -56.4 NC_005262.1 + 32968 0.69 0.456306
Target:  5'- gAUGCGCGUCGCCGAgacgcgcacCGGGUuuGCGAu -3'
miRNA:   3'- -UGCGCGCGGCGGUUa--------GUCCAcuUGUU- -5'
24093 5' -56.4 NC_005262.1 + 6576 0.69 0.455317
Target:  5'- gGCGCGCgucgcgauGCCGCCGAccggCAGGUccgggucGAGCGGg -3'
miRNA:   3'- -UGCGCG--------CGGCGGUUa---GUCCA-------CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 14050 0.69 0.446461
Target:  5'- cGCGgGCGCCGCCGgcGUC-GGUGcGGCu- -3'
miRNA:   3'- -UGCgCGCGGCGGU--UAGuCCAC-UUGuu -5'
24093 5' -56.4 NC_005262.1 + 39074 0.7 0.426178
Target:  5'- cGCGCGCGCCaGCgCGAUCAgcuccucGGUGGuguccGCGAu -3'
miRNA:   3'- -UGCGCGCGG-CG-GUUAGU-------CCACU-----UGUU- -5'
24093 5' -56.4 NC_005262.1 + 22648 0.7 0.399091
Target:  5'- uGCGCGCGCUGCac----GGUGAACGu -3'
miRNA:   3'- -UGCGCGCGGCGguuaguCCACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 3731 0.71 0.381063
Target:  5'- cGCGCGCGgCGUUGcgCAGGaUGAACGc -3'
miRNA:   3'- -UGCGCGCgGCGGUuaGUCC-ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 22540 0.71 0.363588
Target:  5'- uGCGUGauCGCCGCCG-UCAGGUuguuGAACAu -3'
miRNA:   3'- -UGCGC--GCGGCGGUuAGUCCA----CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 20362 0.71 0.363588
Target:  5'- aGCGCGuCGCCGUCGAUCGGauagacguUGAGCGc -3'
miRNA:   3'- -UGCGC-GCGGCGGUUAGUCc-------ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 10435 0.68 0.51765
Target:  5'- gGCGCaUGgCGCCGAUCAGGUucGCGc -3'
miRNA:   3'- -UGCGcGCgGCGGUUAGUCCAcuUGUu -5'
24093 5' -56.4 NC_005262.1 + 22579 0.68 0.528205
Target:  5'- -aGCGUGCCGgCAGUCAuacGGUGcuCGAa -3'
miRNA:   3'- ugCGCGCGGCgGUUAGU---CCACuuGUU- -5'
24093 5' -56.4 NC_005262.1 + 46805 0.66 0.647849
Target:  5'- aGCGCGCGCUcgGCCGGcggCAGcaGGGCAAu -3'
miRNA:   3'- -UGCGCGCGG--CGGUUa--GUCcaCUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 10236 0.66 0.647849
Target:  5'- aGCGCGUGCgCGCCGAgcaccaucUCGGGguacgcGGCGAa -3'
miRNA:   3'- -UGCGCGCG-GCGGUU--------AGUCCac----UUGUU- -5'
24093 5' -56.4 NC_005262.1 + 20744 0.66 0.625859
Target:  5'- gGCGCGCGgUGCCGGcCGGGUcGAUg- -3'
miRNA:   3'- -UGCGCGCgGCGGUUaGUCCAcUUGuu -5'
24093 5' -56.4 NC_005262.1 + 35397 0.67 0.614867
Target:  5'- cACGUGcCGCuCGUCGuUCGGGUcGAACAc -3'
miRNA:   3'- -UGCGC-GCG-GCGGUuAGUCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 12481 0.67 0.614867
Target:  5'- cCGCGCGCggaugCGCCcAUCuGGUcGAGCGg -3'
miRNA:   3'- uGCGCGCG-----GCGGuUAGuCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 53248 0.67 0.603891
Target:  5'- cUGCGCGCgGCCGGUCGcGUcGGCAu -3'
miRNA:   3'- uGCGCGCGgCGGUUAGUcCAcUUGUu -5'
24093 5' -56.4 NC_005262.1 + 46666 0.67 0.586383
Target:  5'- gACGCGCGCguucuugugguccauCGCCGcgC-GGUGGACc- -3'
miRNA:   3'- -UGCGCGCG---------------GCGGUuaGuCCACUUGuu -5'
24093 5' -56.4 NC_005262.1 + 4876 0.67 0.571142
Target:  5'- aGCGCGCGCCaUCGGUCGGGccgccggccUGAucgcGCAGc -3'
miRNA:   3'- -UGCGCGCGGcGGUUAGUCC---------ACU----UGUU- -5'
24093 5' -56.4 NC_005262.1 + 45629 0.68 0.549544
Target:  5'- -gGgGCGCuCGCgCGAUCAGGcGGGCAc -3'
miRNA:   3'- ugCgCGCG-GCG-GUUAGUCCaCUUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.