miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 5' -56.4 NC_005262.1 + 57235 1.05 0.001368
Target:  5'- gACGCGCGCCGCCAAUCAGGUGAACAAc -3'
miRNA:   3'- -UGCGCGCGGCGGUUAGUCCACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 45920 0.68 0.549544
Target:  5'- uGCGCGCGCCGaucaAGUCGGGcuacgucgaGGACGg -3'
miRNA:   3'- -UGCGCGCGGCgg--UUAGUCCa--------CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 4555 0.67 0.603891
Target:  5'- uGCGCGCGCggcgcaucucgCGCCAGcggcggcgcugcUCGGGcgUGAGCGc -3'
miRNA:   3'- -UGCGCGCG-----------GCGGUU------------AGUCC--ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 58898 0.66 0.636856
Target:  5'- uGC-CGCGCUGCgCGAUCAGGccGGCGg -3'
miRNA:   3'- -UGcGCGCGGCG-GUUAGUCCacUUGUu -5'
24093 5' -56.4 NC_005262.1 + 44153 0.66 0.636856
Target:  5'- gACGCGCG-CG-CGAUCGGGcagGAGCGc -3'
miRNA:   3'- -UGCGCGCgGCgGUUAGUCCa--CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 14411 0.66 0.647849
Target:  5'- -gGUGCGUCGCCucaugccuGUCgAGuGUGAGCGAu -3'
miRNA:   3'- ugCGCGCGGCGGu-------UAG-UC-CACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 63323 0.66 0.647849
Target:  5'- cACGCGCGCCGC--GUCgccgAGGUcAACGc -3'
miRNA:   3'- -UGCGCGCGGCGguUAG----UCCAcUUGUu -5'
24093 5' -56.4 NC_005262.1 + 59591 0.66 0.658827
Target:  5'- cGCGCGCGaCuaCGAUCAGGccguggucgUGGGCGAg -3'
miRNA:   3'- -UGCGCGCgGcgGUUAGUCC---------ACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 17490 0.66 0.669781
Target:  5'- aGCGCGCGCCGCgcgcgacgcguCGAUCGGcagccUGAcgACGAu -3'
miRNA:   3'- -UGCGCGCGGCG-----------GUUAGUCc----ACU--UGUU- -5'
24093 5' -56.4 NC_005262.1 + 20167 0.68 0.549544
Target:  5'- gACGaaCG-CGCCAGUCAGGaUGGACAGg -3'
miRNA:   3'- -UGCgcGCgGCGGUUAGUCC-ACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 59697 0.68 0.496802
Target:  5'- -gGCGUGCCGCCAcgCGGGcgcuACGu -3'
miRNA:   3'- ugCGCGCGGCGGUuaGUCCacu-UGUu -5'
24093 5' -56.4 NC_005262.1 + 51585 0.75 0.203253
Target:  5'- -aGCGCGCCGCCcAUCAGGgcgUGAAgGu -3'
miRNA:   3'- ugCGCGCGGCGGuUAGUCC---ACUUgUu -5'
24093 5' -56.4 NC_005262.1 + 50892 0.74 0.22592
Target:  5'- -gGCGCGCCGUCAAUCAccUGAACGc -3'
miRNA:   3'- ugCGCGCGGCGGUUAGUccACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 32684 0.74 0.231912
Target:  5'- uCGCGCugccgGCCGCCGGccucCAGGUGGGCGAc -3'
miRNA:   3'- uGCGCG-----CGGCGGUUa---GUCCACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 6368 0.74 0.250694
Target:  5'- cACGCGCGgaUUGUCAGUCAGGUcGAGCGu -3'
miRNA:   3'- -UGCGCGC--GGCGGUUAGUCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 10834 0.72 0.330335
Target:  5'- cAUGCGCGuCCGCCGcgcUCAGG-GGGCGg -3'
miRNA:   3'- -UGCGCGC-GGCGGUu--AGUCCaCUUGUu -5'
24093 5' -56.4 NC_005262.1 + 9232 0.69 0.446461
Target:  5'- -gGCGUcgGCCGCCAGUCgugAGG-GGACGAc -3'
miRNA:   3'- ugCGCG--CGGCGGUUAG---UCCaCUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 11419 0.69 0.456306
Target:  5'- cCGCGCcggGCCGCCGA--AGGUGcGCGAc -3'
miRNA:   3'- uGCGCG---CGGCGGUUagUCCACuUGUU- -5'
24093 5' -56.4 NC_005262.1 + 62097 0.69 0.466268
Target:  5'- cAUGCGuCGCCGCCGcggcaaccgcGUCGcGGaUGAACGAc -3'
miRNA:   3'- -UGCGC-GCGGCGGU----------UAGU-CC-ACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 12383 0.79 0.117471
Target:  5'- cGCGCGCGCCGCCGAgcaCGcGGUGcACAc -3'
miRNA:   3'- -UGCGCGCGGCGGUUa--GU-CCACuUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.