miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 5' -56.4 NC_005262.1 + 3731 0.71 0.381063
Target:  5'- cGCGCGCGgCGUUGcgCAGGaUGAACGc -3'
miRNA:   3'- -UGCGCGCgGCGGUuaGUCC-ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 4555 0.67 0.603891
Target:  5'- uGCGCGCGCggcgcaucucgCGCCAGcggcggcgcugcUCGGGcgUGAGCGc -3'
miRNA:   3'- -UGCGCGCG-----------GCGGUU------------AGUCC--ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 4876 0.67 0.571142
Target:  5'- aGCGCGCGCCaUCGGUCGGGccgccggccUGAucgcGCAGc -3'
miRNA:   3'- -UGCGCGCGGcGGUUAGUCC---------ACU----UGUU- -5'
24093 5' -56.4 NC_005262.1 + 6368 0.74 0.250694
Target:  5'- cACGCGCGgaUUGUCAGUCAGGUcGAGCGu -3'
miRNA:   3'- -UGCGCGC--GGCGGUUAGUCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 6576 0.69 0.455317
Target:  5'- gGCGCGCgucgcgauGCCGCCGAccggCAGGUccgggucGAGCGGg -3'
miRNA:   3'- -UGCGCG--------CGGCGGUUa---GUCCA-------CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 9232 0.69 0.446461
Target:  5'- -gGCGUcgGCCGCCAGUCgugAGG-GGACGAc -3'
miRNA:   3'- ugCGCG--CGGCGGUUAG---UCCaCUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 10236 0.66 0.647849
Target:  5'- aGCGCGUGCgCGCCGAgcaccaucUCGGGguacgcGGCGAa -3'
miRNA:   3'- -UGCGCGCG-GCGGUU--------AGUCCac----UUGUU- -5'
24093 5' -56.4 NC_005262.1 + 10435 0.68 0.51765
Target:  5'- gGCGCaUGgCGCCGAUCAGGUucGCGc -3'
miRNA:   3'- -UGCGcGCgGCGGUUAGUCCAcuUGUu -5'
24093 5' -56.4 NC_005262.1 + 10834 0.72 0.330335
Target:  5'- cAUGCGCGuCCGCCGcgcUCAGG-GGGCGg -3'
miRNA:   3'- -UGCGCGC-GGCGGUu--AGUCCaCUUGUu -5'
24093 5' -56.4 NC_005262.1 + 11419 0.69 0.456306
Target:  5'- cCGCGCcggGCCGCCGA--AGGUGcGCGAc -3'
miRNA:   3'- uGCGCG---CGGCGGUUagUCCACuUGUU- -5'
24093 5' -56.4 NC_005262.1 + 11654 0.69 0.483456
Target:  5'- uUGCGCGCCGCCucccagaacgacagCAGGUaGGGCu- -3'
miRNA:   3'- uGCGCGCGGCGGuua-----------GUCCA-CUUGuu -5'
24093 5' -56.4 NC_005262.1 + 12383 0.79 0.117471
Target:  5'- cGCGCGCGCCGCCGAgcaCGcGGUGcACAc -3'
miRNA:   3'- -UGCGCGCGGCGGUUa--GU-CCACuUGUu -5'
24093 5' -56.4 NC_005262.1 + 12481 0.67 0.614867
Target:  5'- cCGCGCGCggaugCGCCcAUCuGGUcGAGCGg -3'
miRNA:   3'- uGCGCGCG-----GCGGuUAGuCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 13974 0.72 0.322379
Target:  5'- uCGCGCGCUccaucgcgcgGCCGAUCGGGccGGACGGu -3'
miRNA:   3'- uGCGCGCGG----------CGGUUAGUCCa-CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 14050 0.69 0.446461
Target:  5'- cGCGgGCGCCGCCGgcGUC-GGUGcGGCu- -3'
miRNA:   3'- -UGCgCGCGGCGGU--UAGuCCAC-UUGuu -5'
24093 5' -56.4 NC_005262.1 + 14411 0.66 0.647849
Target:  5'- -gGUGCGUCGCCucaugccuGUCgAGuGUGAGCGAu -3'
miRNA:   3'- ugCGCGCGGCGGu-------UAG-UC-CACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 14434 0.72 0.299377
Target:  5'- cGCGCGCGUCGCCGagucGUCAGc-GAGCGc -3'
miRNA:   3'- -UGCGCGCGGCGGU----UAGUCcaCUUGUu -5'
24093 5' -56.4 NC_005262.1 + 17490 0.66 0.669781
Target:  5'- aGCGCGCGCCGCgcgcgacgcguCGAUCGGcagccUGAcgACGAu -3'
miRNA:   3'- -UGCGCGCGGCG-----------GUUAGUCc----ACU--UGUU- -5'
24093 5' -56.4 NC_005262.1 + 20167 0.68 0.549544
Target:  5'- gACGaaCG-CGCCAGUCAGGaUGGACAGg -3'
miRNA:   3'- -UGCgcGCgGCGGUUAGUCC-ACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 20362 0.71 0.363588
Target:  5'- aGCGCGuCGCCGUCGAUCGGauagacguUGAGCGc -3'
miRNA:   3'- -UGCGC-GCGGCGGUUAGUCc-------ACUUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.