miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 5' -56.4 NC_005262.1 + 57235 1.05 0.001368
Target:  5'- gACGCGCGCCGCCAAUCAGGUGAACAAc -3'
miRNA:   3'- -UGCGCGCGGCGGUUAGUCCACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 12383 0.79 0.117471
Target:  5'- cGCGCGCGCCGCCGAgcaCGcGGUGcACAc -3'
miRNA:   3'- -UGCGCGCGGCGGUUa--GU-CCACuUGUu -5'
24093 5' -56.4 NC_005262.1 + 51585 0.75 0.203253
Target:  5'- -aGCGCGCCGCCcAUCAGGgcgUGAAgGu -3'
miRNA:   3'- ugCGCGCGGCGGuUAGUCC---ACUUgUu -5'
24093 5' -56.4 NC_005262.1 + 42119 0.75 0.208728
Target:  5'- aGCGCgGCGCCGCCGcUCAGGuUGcGCGu -3'
miRNA:   3'- -UGCG-CGCGGCGGUuAGUCC-ACuUGUu -5'
24093 5' -56.4 NC_005262.1 + 50892 0.74 0.22592
Target:  5'- -gGCGCGCCGUCAAUCAccUGAACGc -3'
miRNA:   3'- ugCGCGCGGCGGUUAGUccACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 32684 0.74 0.231912
Target:  5'- uCGCGCugccgGCCGCCGGccucCAGGUGGGCGAc -3'
miRNA:   3'- uGCGCG-----CGGCGGUUa---GUCCACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 6368 0.74 0.250694
Target:  5'- cACGCGCGgaUUGUCAGUCAGGUcGAGCGu -3'
miRNA:   3'- -UGCGCGC--GGCGGUUAGUCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 52158 0.72 0.299377
Target:  5'- gACGCcgGCGCCGCCGAgccgauggugCAGG-GGGCAGa -3'
miRNA:   3'- -UGCG--CGCGGCGGUUa---------GUCCaCUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 14434 0.72 0.299377
Target:  5'- cGCGCGCGUCGCCGagucGUCAGc-GAGCGc -3'
miRNA:   3'- -UGCGCGCGGCGGU----UAGUCcaCUUGUu -5'
24093 5' -56.4 NC_005262.1 + 29308 0.72 0.3069
Target:  5'- uCGCGCGCCGCCGcgCGGauGUGcuCGAa -3'
miRNA:   3'- uGCGCGCGGCGGUuaGUC--CACuuGUU- -5'
24093 5' -56.4 NC_005262.1 + 13974 0.72 0.322379
Target:  5'- uCGCGCGCUccaucgcgcgGCCGAUCGGGccGGACGGu -3'
miRNA:   3'- uGCGCGCGG----------CGGUUAGUCCa-CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 10834 0.72 0.330335
Target:  5'- cAUGCGCGuCCGCCGcgcUCAGG-GGGCGg -3'
miRNA:   3'- -UGCGCGC-GGCGGUu--AGUCCaCUUGUu -5'
24093 5' -56.4 NC_005262.1 + 39412 0.71 0.338434
Target:  5'- gUGCGCGCCGCCGGUuuggcgucgaCAGGguuGCAGg -3'
miRNA:   3'- uGCGCGCGGCGGUUA----------GUCCacuUGUU- -5'
24093 5' -56.4 NC_005262.1 + 42046 0.71 0.346676
Target:  5'- gACGCGUGCCGCUgcgcGAUCuuccGUGAGCGc -3'
miRNA:   3'- -UGCGCGCGGCGG----UUAGuc--CACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 29722 0.71 0.346676
Target:  5'- cGCGCGCGCggcgUGCCAGUCcGGGUucuggucgucGAGCAAc -3'
miRNA:   3'- -UGCGCGCG----GCGGUUAG-UCCA----------CUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 22540 0.71 0.363588
Target:  5'- uGCGUGauCGCCGCCG-UCAGGUuguuGAACAu -3'
miRNA:   3'- -UGCGC--GCGGCGGUuAGUCCA----CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 20362 0.71 0.363588
Target:  5'- aGCGCGuCGCCGUCGAUCGGauagacguUGAGCGc -3'
miRNA:   3'- -UGCGC-GCGGCGGUUAGUCc-------ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 3731 0.71 0.381063
Target:  5'- cGCGCGCGgCGUUGcgCAGGaUGAACGc -3'
miRNA:   3'- -UGCGCGCgGCGGUuaGUCC-ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 22648 0.7 0.399091
Target:  5'- uGCGCGCGCUGCac----GGUGAACGu -3'
miRNA:   3'- -UGCGCGCGGCGguuaguCCACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 39074 0.7 0.426178
Target:  5'- cGCGCGCGCCaGCgCGAUCAgcuccucGGUGGuguccGCGAu -3'
miRNA:   3'- -UGCGCGCGG-CG-GUUAGU-------CCACU-----UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.