miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 55747 0.67 0.610553
Target:  5'- -cGCucaccCAGAACGcGCGCUGCGUCa- -3'
miRNA:   3'- caCGuc---GUCUUGCuCGCGGCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 52344 0.67 0.610553
Target:  5'- -cGCGGUAGGcacgaugcGCGGGCGCgGCGugUCGc -3'
miRNA:   3'- caCGUCGUCU--------UGCUCGCGgCGU--AGCu -5'
24094 3' -56.3 NC_005262.1 + 45806 0.67 0.610553
Target:  5'- -gGCAGCcacgucgaAGAACGugcgcacuuccGGCGCUGCGUcCGAu -3'
miRNA:   3'- caCGUCG--------UCUUGC-----------UCGCGGCGUA-GCU- -5'
24094 3' -56.3 NC_005262.1 + 61583 0.67 0.610553
Target:  5'- -aGCGGCuucGAcGCGAuGUGCCGCGcgaUCGAa -3'
miRNA:   3'- caCGUCGu--CU-UGCU-CGCGGCGU---AGCU- -5'
24094 3' -56.3 NC_005262.1 + 52555 0.67 0.588785
Target:  5'- gGUGC-GCAGcGCGAuCGUCGCuGUCGAg -3'
miRNA:   3'- -CACGuCGUCuUGCUcGCGGCG-UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 60438 0.67 0.588785
Target:  5'- cGUGCGGCAucuAGCGAGCcGCgGCcUCGu -3'
miRNA:   3'- -CACGUCGUc--UUGCUCG-CGgCGuAGCu -5'
24094 3' -56.3 NC_005262.1 + 46919 0.67 0.588785
Target:  5'- gGUGCGGCccggcgcgcGGcCGGGCGCCuGCAUCa- -3'
miRNA:   3'- -CACGUCGu--------CUuGCUCGCGG-CGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 51342 0.68 0.576869
Target:  5'- cGUG-AGCgacgucucgacgaGGAuCGuGCGCCGCAUCGGc -3'
miRNA:   3'- -CACgUCG-------------UCUuGCuCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 46659 0.68 0.56716
Target:  5'- -aGCGGCAGcAUG-GCGCCgGCAcCGAc -3'
miRNA:   3'- caCGUCGUCuUGCuCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 5271 0.68 0.56716
Target:  5'- cGUGCAGCAGcACGGGCaggGCgGUCGAc -3'
miRNA:   3'- -CACGUCGUCuUGCUCGcggCG-UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 46794 0.68 0.556422
Target:  5'- --uCAGCAcGACGAGCGCgCGC-UCGGc -3'
miRNA:   3'- cacGUCGUcUUGCUCGCG-GCGuAGCU- -5'
24094 3' -56.3 NC_005262.1 + 23009 0.68 0.556422
Target:  5'- cGUGCGGCAuGAAUGcGGCuuCCGCGUgGAg -3'
miRNA:   3'- -CACGUCGU-CUUGC-UCGc-GGCGUAgCU- -5'
24094 3' -56.3 NC_005262.1 + 6682 0.68 0.556422
Target:  5'- -aGCGGCGGAACuGGaGCC-CGUCGAc -3'
miRNA:   3'- caCGUCGUCUUGcUCgCGGcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 58132 0.68 0.545743
Target:  5'- gGUGCAGUAccucccGAugGuGCGCgGCAUCc- -3'
miRNA:   3'- -CACGUCGU------CUugCuCGCGgCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 18494 0.68 0.53513
Target:  5'- uGUGCAGCuuuccguacAGAAgcCGAGCGCgcaGCAccUCGAa -3'
miRNA:   3'- -CACGUCG---------UCUU--GCUCGCGg--CGU--AGCU- -5'
24094 3' -56.3 NC_005262.1 + 13540 0.68 0.524591
Target:  5'- uGUGCAGCGGcauCGAG-GCCGCGa--- -3'
miRNA:   3'- -CACGUCGUCuu-GCUCgCGGCGUagcu -5'
24094 3' -56.3 NC_005262.1 + 4872 0.69 0.514132
Target:  5'- -cGCAGCuugcCGAGCGCCGacUCGAc -3'
miRNA:   3'- caCGUCGucuuGCUCGCGGCguAGCU- -5'
24094 3' -56.3 NC_005262.1 + 21290 0.69 0.514132
Target:  5'- -aGCAGCAGAu---GCGUCGCGuUCGGc -3'
miRNA:   3'- caCGUCGUCUugcuCGCGGCGU-AGCU- -5'
24094 3' -56.3 NC_005262.1 + 10634 0.69 0.50376
Target:  5'- -cGCgaagGGCGGGuugcCGAuCGCCGCGUCGAa -3'
miRNA:   3'- caCG----UCGUCUu---GCUcGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 2766 0.69 0.493479
Target:  5'- -aGCA-CGGcGGCGGGUGCCGCAUCc- -3'
miRNA:   3'- caCGUcGUC-UUGCUCGCGGCGUAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.