Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24094 | 3' | -56.3 | NC_005262.1 | + | 13805 | 0.76 | 0.187243 |
Target: 5'- -cGCGGCuucaucggcgGGAGCGGGCGCCGCugucucGUCGGc -3' miRNA: 3'- caCGUCG----------UCUUGCUCGCGGCG------UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 14029 | 0.73 | 0.316148 |
Target: 5'- -gGCAGCGGccggagccucgggcGCGGGCGCCGCcggcGUCGGu -3' miRNA: 3'- caCGUCGUCu-------------UGCUCGCGGCG----UAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 14243 | 0.66 | 0.66513 |
Target: 5'- -cGCacgAGCAGGACGcAGCGUCGC--CGGa -3' miRNA: 3'- caCG---UCGUCUUGC-UCGCGGCGuaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 15611 | 0.73 | 0.304729 |
Target: 5'- cGUGCGGCAgGAGCGcaucgaGGCGCggcugaaCGCGUCGGg -3' miRNA: 3'- -CACGUCGU-CUUGC------UCGCG-------GCGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 15913 | 0.7 | 0.433998 |
Target: 5'- -cGUGGCGccGCGAuGCGCCGCAgagCGAg -3' miRNA: 3'- caCGUCGUcuUGCU-CGCGGCGUa--GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 16465 | 0.66 | 0.69759 |
Target: 5'- -cGCuGCGucuCGAGCGCCGaAUCGGu -3' miRNA: 3'- caCGuCGUcuuGCUCGCGGCgUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 16584 | 0.69 | 0.493479 |
Target: 5'- cUGCGGCGGcGAC-AGUGCCGCGagccccauuUCGAg -3' miRNA: 3'- cACGUCGUC-UUGcUCGCGGCGU---------AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 17124 | 0.67 | 0.610553 |
Target: 5'- -cGCGGCgauggaccacaAGAACGcgcGCGUCGCAaUCGAg -3' miRNA: 3'- caCGUCG-----------UCUUGCu--CGCGGCGU-AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 17210 | 0.72 | 0.328679 |
Target: 5'- cUGCGGCgAGGACG-GCGCUgGCGUCGu -3' miRNA: 3'- cACGUCG-UCUUGCuCGCGG-CGUAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 17606 | 0.71 | 0.361595 |
Target: 5'- -aGCGcGCGGAGCugGAGCGCCaGCAgcgCGAg -3' miRNA: 3'- caCGU-CGUCUUG--CUCGCGG-CGUa--GCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 18494 | 0.68 | 0.53513 |
Target: 5'- uGUGCAGCuuuccguacAGAAgcCGAGCGCgcaGCAccUCGAa -3' miRNA: 3'- -CACGUCG---------UCUU--GCUCGCGg--CGU--AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 18643 | 0.72 | 0.328679 |
Target: 5'- -cGCAcGCAGcGCGAGCGCCuuGUCGc -3' miRNA: 3'- caCGU-CGUCuUGCUCGCGGcgUAGCu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 18877 | 0.66 | 0.64332 |
Target: 5'- -cGgAGCAGcGCcuuGCGCCGCAUCc- -3' miRNA: 3'- caCgUCGUCuUGcu-CGCGGCGUAGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 21290 | 0.69 | 0.514132 |
Target: 5'- -aGCAGCAGAu---GCGUCGCGuUCGGc -3' miRNA: 3'- caCGUCGUCUugcuCGCGGCGU-AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 21548 | 0.7 | 0.443627 |
Target: 5'- -cGCAGU-GAGCGcGGCGCUcgGCAUCGGa -3' miRNA: 3'- caCGUCGuCUUGC-UCGCGG--CGUAGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 21771 | 0.66 | 0.64332 |
Target: 5'- uUGCGGUacGGggUGAG-GCCGCccgauUCGAg -3' miRNA: 3'- cACGUCG--UCuuGCUCgCGGCGu----AGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 22632 | 0.66 | 0.69759 |
Target: 5'- -cGCGGCGGugcccuccuGCGcGCGCUGCA-CGGu -3' miRNA: 3'- caCGUCGUCu--------UGCuCGCGGCGUaGCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 22800 | 0.69 | 0.473213 |
Target: 5'- gGUGCcauCAGcAGCGAGCGCCGCcgCc- -3' miRNA: 3'- -CACGuc-GUC-UUGCUCGCGGCGuaGcu -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 23009 | 0.68 | 0.556422 |
Target: 5'- cGUGCGGCAuGAAUGcGGCuuCCGCGUgGAg -3' miRNA: 3'- -CACGUCGU-CUUGC-UCGc-GGCGUAgCU- -5' |
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24094 | 3' | -56.3 | NC_005262.1 | + | 23414 | 0.66 | 0.66513 |
Target: 5'- aUGCGGCGGGcagcAUGAGC-CgCGuCAUCGAg -3' miRNA: 3'- cACGUCGUCU----UGCUCGcG-GC-GUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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