miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 1519 0.74 0.256289
Target:  5'- cUGCGGCGGAACGuauugcgugaacAGCGCCaGCGUUGc -3'
miRNA:   3'- cACGUCGUCUUGC------------UCGCGG-CGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 1743 0.84 0.050035
Target:  5'- uGUGCAGgAG-GCGAuGCGCCGCAUCGAg -3'
miRNA:   3'- -CACGUCgUCuUGCU-CGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 2766 0.69 0.493479
Target:  5'- -aGCA-CGGcGGCGGGUGCCGCAUCc- -3'
miRNA:   3'- caCGUcGUC-UUGCUCGCGGCGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 3824 0.66 0.658596
Target:  5'- gGUGCaugcgcgccugaucgAGCGGGcgaaucugcuucGCGAGCGCCuCGUCGu -3'
miRNA:   3'- -CACG---------------UCGUCU------------UGCUCGCGGcGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 4872 0.69 0.514132
Target:  5'- -cGCAGCuugcCGAGCGCCGacUCGAc -3'
miRNA:   3'- caCGUCGucuuGCUCGCGGCguAGCU- -5'
24094 3' -56.3 NC_005262.1 + 5190 0.66 0.66513
Target:  5'- gGUGCAGCGcauCGAgGCGCCcCAUCa- -3'
miRNA:   3'- -CACGUCGUcuuGCU-CGCGGcGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 5271 0.68 0.56716
Target:  5'- cGUGCAGCAGcACGGGCaggGCgGUCGAc -3'
miRNA:   3'- -CACGUCGUCuUGCUCGcggCG-UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 6446 0.7 0.41511
Target:  5'- cGUGUAGUucGGcuccGGCGAGaCGCCGgCAUCGAc -3'
miRNA:   3'- -CACGUCG--UC----UUGCUC-GCGGC-GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 6640 0.66 0.69759
Target:  5'- uGUGCGGCGGcgcuuCGAucGCGUCGCcguccUCGAu -3'
miRNA:   3'- -CACGUCGUCuu---GCU--CGCGGCGu----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 6682 0.68 0.556422
Target:  5'- -aGCGGCGGAACuGGaGCC-CGUCGAc -3'
miRNA:   3'- caCGUCGUCUUGcUCgCGGcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 9174 0.66 0.650962
Target:  5'- cUGCucGGCGGAccACGAGCcgaGCCGCgaguuguagcugacGUCGAu -3'
miRNA:   3'- cACG--UCGUCU--UGCUCG---CGGCG--------------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 9673 0.67 0.621469
Target:  5'- -aGCgAGUAGGcgaGGGCGCCGUcgacGUCGAg -3'
miRNA:   3'- caCG-UCGUCUug-CUCGCGGCG----UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 10427 0.66 0.64332
Target:  5'- cUGCGGCAG-GCGcauGGCGCCG-AUCa- -3'
miRNA:   3'- cACGUCGUCuUGC---UCGCGGCgUAGcu -5'
24094 3' -56.3 NC_005262.1 + 10517 0.67 0.621469
Target:  5'- -aGCAGCAGcGCGGGgGCgGC--CGAa -3'
miRNA:   3'- caCGUCGUCuUGCUCgCGgCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 10634 0.69 0.50376
Target:  5'- -cGCgaagGGCGGGuugcCGAuCGCCGCGUCGAa -3'
miRNA:   3'- caCG----UCGUCUu---GCUcGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 12331 0.66 0.686818
Target:  5'- cGUGCcGCAGcGCGcGGCGgCaGCAUUGAa -3'
miRNA:   3'- -CACGuCGUCuUGC-UCGCgG-CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 12552 0.69 0.483295
Target:  5'- -gGCGGCAGGucGCG-GCGgCGCucGUCGAg -3'
miRNA:   3'- caCGUCGUCU--UGCuCGCgGCG--UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 12605 0.74 0.243479
Target:  5'- -cGCGGCuccAGCGGGcCGCCGCGUCGu -3'
miRNA:   3'- caCGUCGuc-UUGCUC-GCGGCGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 12814 0.66 0.66513
Target:  5'- -cGCAGCcggcgcgugaAGAAgGAGCGCgGCcUCGc -3'
miRNA:   3'- caCGUCG----------UCUUgCUCGCGgCGuAGCu -5'
24094 3' -56.3 NC_005262.1 + 13540 0.68 0.524591
Target:  5'- uGUGCAGCGGcauCGAG-GCCGCGa--- -3'
miRNA:   3'- -CACGUCGUCuu-GCUCgCGGCGUagcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.