miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 57295 1.09 0.000826
Target:  5'- cGUGCAGCAGAACGAGCGCCGCAUCGAg -3'
miRNA:   3'- -CACGUCGUCUUGCUCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 55390 0.9 0.019077
Target:  5'- -cGCaAGCAGAuCGAGCGCCGCAUCGAg -3'
miRNA:   3'- caCG-UCGUCUuGCUCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 51232 0.87 0.03141
Target:  5'- -aGCAGCAGcucGACGAGCGCCGCcgCGAc -3'
miRNA:   3'- caCGUCGUC---UUGCUCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 1743 0.84 0.050035
Target:  5'- uGUGCAGgAG-GCGAuGCGCCGCAUCGAg -3'
miRNA:   3'- -CACGUCgUCuUGCU-CGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 28838 0.8 0.096644
Target:  5'- uUGCGGC----CGAGCGCCGCGUCGAa -3'
miRNA:   3'- cACGUCGucuuGCUCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 48292 0.79 0.111225
Target:  5'- uGUGCAGCucgccgguGAGCGAGcCGCCGCGcUCGGu -3'
miRNA:   3'- -CACGUCGu-------CUUGCUC-GCGGCGU-AGCU- -5'
24094 3' -56.3 NC_005262.1 + 32867 0.76 0.182297
Target:  5'- cGUGCGGCGccGAGCuGuuCGCCGCGUCGAa -3'
miRNA:   3'- -CACGUCGU--CUUG-CucGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 13805 0.76 0.187243
Target:  5'- -cGCGGCuucaucggcgGGAGCGGGCGCCGCugucucGUCGGc -3'
miRNA:   3'- caCGUCG----------UCUUGCUCGCGGCG------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 12605 0.74 0.243479
Target:  5'- -cGCGGCuccAGCGGGcCGCCGCGUCGu -3'
miRNA:   3'- caCGUCGuc-UUGCUC-GCGGCGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 37715 0.74 0.249816
Target:  5'- -gGCGuGCAGAugGGGCGUgaagggcugCGCGUCGAa -3'
miRNA:   3'- caCGU-CGUCUugCUCGCG---------GCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 49221 0.74 0.249816
Target:  5'- gGUGCGGUGcGcgUGAGCGCCGCggCGAg -3'
miRNA:   3'- -CACGUCGU-CuuGCUCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 1519 0.74 0.256289
Target:  5'- cUGCGGCGGAACGuauugcgugaacAGCGCCaGCGUUGc -3'
miRNA:   3'- cACGUCGUCUUGC------------UCGCGG-CGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 28405 0.74 0.269646
Target:  5'- cGUGCGcGCGGuauUGAGCGCCGCGUgCGc -3'
miRNA:   3'- -CACGU-CGUCuu-GCUCGCGGCGUA-GCu -5'
24094 3' -56.3 NC_005262.1 + 52148 0.73 0.276532
Target:  5'- cGUGCAGCGcGACGccGGCGCCGC--CGAg -3'
miRNA:   3'- -CACGUCGUcUUGC--UCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 42952 0.73 0.290724
Target:  5'- cUGCGucguGUAGAGCGGGUGCCGCGccccgCGAu -3'
miRNA:   3'- cACGU----CGUCUUGCUCGCGGCGUa----GCU- -5'
24094 3' -56.3 NC_005262.1 + 15611 0.73 0.304729
Target:  5'- cGUGCGGCAgGAGCGcaucgaGGCGCggcugaaCGCGUCGGg -3'
miRNA:   3'- -CACGUCGU-CUUGC------UCGCG-------GCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 41618 0.73 0.313071
Target:  5'- -gGCAGCGGAACGGuGaCGCCGUacaaugguGUCGGu -3'
miRNA:   3'- caCGUCGUCUUGCU-C-GCGGCG--------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 14029 0.73 0.316148
Target:  5'- -gGCAGCGGccggagccucgggcGCGGGCGCCGCcggcGUCGGu -3'
miRNA:   3'- caCGUCGUCu-------------UGCUCGCGGCG----UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 47917 0.72 0.320804
Target:  5'- -cGCGGCGGAuc-AGCGCCaucGCGUCGAg -3'
miRNA:   3'- caCGUCGUCUugcUCGCGG---CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 18643 0.72 0.328679
Target:  5'- -cGCAcGCAGcGCGAGCGCCuuGUCGc -3'
miRNA:   3'- caCGU-CGUCuUGCUCGCGGcgUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.