miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 12552 0.69 0.483295
Target:  5'- -gGCGGCAGGucGCG-GCGgCGCucGUCGAg -3'
miRNA:   3'- caCGUCGUCU--UGCuCGCgGCG--UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 6446 0.7 0.41511
Target:  5'- cGUGUAGUucGGcuccGGCGAGaCGCCGgCAUCGAc -3'
miRNA:   3'- -CACGUCG--UC----UUGCUC-GCGGC-GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 34027 0.7 0.424491
Target:  5'- -gGCcGCAu--CGuGCGCCGCGUCGAu -3'
miRNA:   3'- caCGuCGUcuuGCuCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 50339 0.7 0.424491
Target:  5'- -cGC-GCAGGACGaAGCGCCcGCGaCGAc -3'
miRNA:   3'- caCGuCGUCUUGC-UCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 15913 0.7 0.433998
Target:  5'- -cGUGGCGccGCGAuGCGCCGCAgagCGAg -3'
miRNA:   3'- caCGUCGUcuUGCU-CGCGGCGUa--GCU- -5'
24094 3' -56.3 NC_005262.1 + 47915 0.7 0.433998
Target:  5'- uUGUuuuuGCAGAcgcCGAGCGCCGgcgaCAUCGAa -3'
miRNA:   3'- cACGu---CGUCUu--GCUCGCGGC----GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 53700 0.7 0.453375
Target:  5'- -gGCGcGCAGAACccG-GCCGCGUCGAa -3'
miRNA:   3'- caCGU-CGUCUUGcuCgCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 29387 0.69 0.473213
Target:  5'- -aGCAGCAGuacAACGAcGCGCuCGCgAUCGc -3'
miRNA:   3'- caCGUCGUC---UUGCU-CGCG-GCG-UAGCu -5'
24094 3' -56.3 NC_005262.1 + 50417 0.69 0.473213
Target:  5'- -cGCcGCGGAgcGCGAGgGCCGCGUg-- -3'
miRNA:   3'- caCGuCGUCU--UGCUCgCGGCGUAgcu -5'
24094 3' -56.3 NC_005262.1 + 49150 0.71 0.378892
Target:  5'- -gGCAcGguGGGCGuGCagGCCGCAUCGGc -3'
miRNA:   3'- caCGU-CguCUUGCuCG--CGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 39914 0.71 0.370174
Target:  5'- cGUGCGGguGAcacaauACGuguGCGCCGCG-CGGg -3'
miRNA:   3'- -CACGUCguCU------UGCu--CGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 52650 0.71 0.361595
Target:  5'- -cGCagAGCAGAACGuGCGCauCGUCGAg -3'
miRNA:   3'- caCG--UCGUCUUGCuCGCGgcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 55390 0.9 0.019077
Target:  5'- -cGCaAGCAGAuCGAGCGCCGCAUCGAg -3'
miRNA:   3'- caCG-UCGUCUuGCUCGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 32867 0.76 0.182297
Target:  5'- cGUGCGGCGccGAGCuGuuCGCCGCGUCGAa -3'
miRNA:   3'- -CACGUCGU--CUUG-CucGCGGCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 37715 0.74 0.249816
Target:  5'- -gGCGuGCAGAugGGGCGUgaagggcugCGCGUCGAa -3'
miRNA:   3'- caCGU-CGUCUugCUCGCG---------GCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 1519 0.74 0.256289
Target:  5'- cUGCGGCGGAACGuauugcgugaacAGCGCCaGCGUUGc -3'
miRNA:   3'- cACGUCGUCUUGC------------UCGCGG-CGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 15611 0.73 0.304729
Target:  5'- cGUGCGGCAgGAGCGcaucgaGGCGCggcugaaCGCGUCGGg -3'
miRNA:   3'- -CACGUCGU-CUUGC------UCGCG-------GCGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 41618 0.73 0.313071
Target:  5'- -gGCAGCGGAACGGuGaCGCCGUacaaugguGUCGGu -3'
miRNA:   3'- caCGUCGUCUUGCU-C-GCGGCG--------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 43790 0.72 0.343212
Target:  5'- aGUGCAGCAGAugcaggagcuuuCGGGCGaUCGCggCGAc -3'
miRNA:   3'- -CACGUCGUCUu-----------GCUCGC-GGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 17606 0.71 0.361595
Target:  5'- -aGCGcGCGGAGCugGAGCGCCaGCAgcgCGAg -3'
miRNA:   3'- caCGU-CGUCUUG--CUCGCGG-CGUa--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.