miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24095 3' -56.6 NC_005262.1 + 57943 1.07 0.001184
Target:  5'- gCAUUCAACGUGGAGGGCGCGAGCGCGc -3'
miRNA:   3'- -GUAAGUUGCACCUCCCGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 5180 0.77 0.18173
Target:  5'- ---cCGGCGUcGcGGGCGCGGGCGCGg -3'
miRNA:   3'- guaaGUUGCAcCuCCCGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 25684 0.74 0.267563
Target:  5'- --gUCGACGgccGAGGGcCGCGAGgGCGa -3'
miRNA:   3'- guaAGUUGCac-CUCCC-GCGCUCgCGC- -5'
24095 3' -56.6 NC_005262.1 + 14030 0.73 0.310151
Target:  5'- ---gCAGCGgccGGAgccucGGGCGCGGGCGCc -3'
miRNA:   3'- guaaGUUGCa--CCU-----CCCGCGCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 19115 0.72 0.32545
Target:  5'- -----cACGUucGGAucGGGCGCGGGCGCGu -3'
miRNA:   3'- guaaguUGCA--CCU--CCCGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 41567 0.71 0.386838
Target:  5'- ---cCGGCGUGGGcGGCGCGgccgugagcuugucgAGCGCGa -3'
miRNA:   3'- guaaGUUGCACCUcCCGCGC---------------UCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 1905 0.71 0.401078
Target:  5'- -cUUCgAGCGgggcGGAGGGUGCGGGuUGCGu -3'
miRNA:   3'- guAAG-UUGCa---CCUCCCGCGCUC-GCGC- -5'
24095 3' -56.6 NC_005262.1 + 52407 0.71 0.409233
Target:  5'- -cUUCGGCGUGGAGccgcGCGCGAacgucguGCGCu -3'
miRNA:   3'- guAAGUUGCACCUCc---CGCGCU-------CGCGc -5'
24095 3' -56.6 NC_005262.1 + 32279 0.71 0.410146
Target:  5'- -cUUCAACGauuacGGCGCGGGCGCGa -3'
miRNA:   3'- guAAGUUGCaccucCCGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 5892 0.7 0.438096
Target:  5'- --aUCGACGUcGAugucGGGCGgGAGCGCc -3'
miRNA:   3'- guaAGUUGCAcCU----CCCGCgCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 22701 0.7 0.466124
Target:  5'- --cUCGACGUGGccGGCGgcguugaCGAGCGUGc -3'
miRNA:   3'- guaAGUUGCACCucCCGC-------GCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 34119 0.69 0.527882
Target:  5'- gAUUC-GCGgguUGGGcGGGCugcGCGGGCGCGg -3'
miRNA:   3'- gUAAGuUGC---ACCU-CCCG---CGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 15582 0.69 0.527882
Target:  5'- ----gAGC-UGGAGGcGCGCGcGCGCGa -3'
miRNA:   3'- guaagUUGcACCUCC-CGCGCuCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 51188 0.68 0.548808
Target:  5'- ---gCGGCGagGGAGGGCGCGcucaucCGCGa -3'
miRNA:   3'- guaaGUUGCa-CCUCCCGCGCuc----GCGC- -5'
24095 3' -56.6 NC_005262.1 + 49200 0.68 0.559368
Target:  5'- uCGUUUugUGUGGuguuguuGGGUGCGGuGCGCGu -3'
miRNA:   3'- -GUAAGuuGCACCu------CCCGCGCU-CGCGC- -5'
24095 3' -56.6 NC_005262.1 + 53048 0.68 0.563609
Target:  5'- ----gGGCGUGGAGuacgacgcgcugaccGGCGCGAuCGCGa -3'
miRNA:   3'- guaagUUGCACCUC---------------CCGCGCUcGCGC- -5'
24095 3' -56.6 NC_005262.1 + 41150 0.67 0.612861
Target:  5'- aCGUUCAcCGUgcagcgcgcgcaGGAGGGCaccgccgcgaucGCGuGCGCGc -3'
miRNA:   3'- -GUAAGUuGCA------------CCUCCCG------------CGCuCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 36309 0.67 0.612861
Target:  5'- --gUCGACuucgGUGGGGGGC-CGGuGCGCu -3'
miRNA:   3'- guaAGUUG----CACCUCCCGcGCU-CGCGc -5'
24095 3' -56.6 NC_005262.1 + 56739 0.67 0.612861
Target:  5'- gCGUUCGacauggccgccGCGcUGGcgucGGGCGaCGAGCGCu -3'
miRNA:   3'- -GUAAGU-----------UGC-ACCu---CCCGC-GCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 15464 0.67 0.622563
Target:  5'- --aUCGAUGUGcGAGaagcacGGCGCuuacaccGAGCGCGg -3'
miRNA:   3'- guaAGUUGCAC-CUC------CCGCG-------CUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.