miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24095 3' -56.6 NC_005262.1 + 22365 0.66 0.709338
Target:  5'- ---gCGugGUgcGGAGGGUGuCcGGCGCGg -3'
miRNA:   3'- guaaGUugCA--CCUCCCGC-GcUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 17298 0.67 0.627956
Target:  5'- gGUUCGGCaGgagaaGGAggaagcagaccgcaaGGaGCGCGAGCGCGu -3'
miRNA:   3'- gUAAGUUG-Ca----CCU---------------CC-CGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 17089 0.67 0.634428
Target:  5'- cCcgUCGACGcGGcGGGcCGCGAggagguccaccGCGCGg -3'
miRNA:   3'- -GuaAGUUGCaCCuCCC-GCGCU-----------CGCGC- -5'
24095 3' -56.6 NC_005262.1 + 51947 0.67 0.645214
Target:  5'- ---aCAAgGUGGAGGcCGCucGCGCGc -3'
miRNA:   3'- guaaGUUgCACCUCCcGCGcuCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 13447 0.67 0.645214
Target:  5'- --gUCcGCGUGaAGGGuCGCaaGGGCGCGa -3'
miRNA:   3'- guaAGuUGCACcUCCC-GCG--CUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 60848 0.67 0.645214
Target:  5'- --aUCGGCGUGGcgauggccgAGGcaaugcGCGCGAaaGCGCGa -3'
miRNA:   3'- guaAGUUGCACC---------UCC------CGCGCU--CGCGC- -5'
24095 3' -56.6 NC_005262.1 + 4583 0.66 0.688143
Target:  5'- ---gCGGCGcUGcucGGGCGUGAGCGCc -3'
miRNA:   3'- guaaGUUGC-ACcu-CCCGCGCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 3814 0.66 0.688143
Target:  5'- --cUCGACGgcccGGAGgaaGGUGcCGAGCGCc -3'
miRNA:   3'- guaAGUUGCa---CCUC---CCGC-GCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 35825 0.66 0.698772
Target:  5'- --aUCAugGgccGGAGcGGCGUcGGCGCc -3'
miRNA:   3'- guaAGUugCa--CCUC-CCGCGcUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 15464 0.67 0.622563
Target:  5'- --aUCGAUGUGcGAGaagcacGGCGCuuacaccGAGCGCGg -3'
miRNA:   3'- guaAGUUGCAC-CUC------CCGCG-------CUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 56739 0.67 0.612861
Target:  5'- gCGUUCGacauggccgccGCGcUGGcgucGGGCGaCGAGCGCu -3'
miRNA:   3'- -GUAAGU-----------UGC-ACCu---CCCGC-GCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 41150 0.67 0.612861
Target:  5'- aCGUUCAcCGUgcagcgcgcgcaGGAGGGCaccgccgcgaucGCGuGCGCGc -3'
miRNA:   3'- -GUAAGUuGCA------------CCUCCCG------------CGCuCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 5180 0.77 0.18173
Target:  5'- ---cCGGCGUcGcGGGCGCGGGCGCGg -3'
miRNA:   3'- guaaGUUGCAcCuCCCGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 25684 0.74 0.267563
Target:  5'- --gUCGACGgccGAGGGcCGCGAGgGCGa -3'
miRNA:   3'- guaAGUUGCac-CUCCC-GCGCUCgCGC- -5'
24095 3' -56.6 NC_005262.1 + 1905 0.71 0.401078
Target:  5'- -cUUCgAGCGgggcGGAGGGUGCGGGuUGCGu -3'
miRNA:   3'- guAAG-UUGCa---CCUCCCGCGCUC-GCGC- -5'
24095 3' -56.6 NC_005262.1 + 32279 0.71 0.410146
Target:  5'- -cUUCAACGauuacGGCGCGGGCGCGa -3'
miRNA:   3'- guAAGUUGCaccucCCGCGCUCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 5892 0.7 0.438096
Target:  5'- --aUCGACGUcGAugucGGGCGgGAGCGCc -3'
miRNA:   3'- guaAGUUGCAcCU----CCCGCgCUCGCGc -5'
24095 3' -56.6 NC_005262.1 + 15582 0.69 0.527882
Target:  5'- ----gAGC-UGGAGGcGCGCGcGCGCGa -3'
miRNA:   3'- guaagUUGcACCUCC-CGCGCuCGCGC- -5'
24095 3' -56.6 NC_005262.1 + 53048 0.68 0.563609
Target:  5'- ----gGGCGUGGAGuacgacgcgcugaccGGCGCGAuCGCGa -3'
miRNA:   3'- guaagUUGCACCUC---------------CCGCGCUcGCGC- -5'
24095 3' -56.6 NC_005262.1 + 36309 0.67 0.612861
Target:  5'- --gUCGACuucgGUGGGGGGC-CGGuGCGCu -3'
miRNA:   3'- guaAGUUG----CACCUCCCGcGCU-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.