miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24095 5' -56.5 NC_005262.1 + 12584 0.67 0.576911
Target:  5'- cGGUGCgaucagcaucGCCCGCGcggCUCCaGCGGGc-- -3'
miRNA:   3'- -CCGCG----------CGGGCGUa--GAGGaUGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 17709 0.68 0.566164
Target:  5'- cGGCGCGgCCGUc-CUCCcaauaUGCGGAGc- -3'
miRNA:   3'- -CCGCGCgGGCGuaGAGG-----AUGCCUUuu -5'
24095 5' -56.5 NC_005262.1 + 12975 0.68 0.566164
Target:  5'- aGCGUGCCCGU--CUCCgGCGcGAAGc -3'
miRNA:   3'- cCGCGCGGGCGuaGAGGaUGC-CUUUu -5'
24095 5' -56.5 NC_005262.1 + 22325 0.69 0.513354
Target:  5'- uGUGCGCCgGCAUCUgggCUGCGGu--- -3'
miRNA:   3'- cCGCGCGGgCGUAGAg--GAUGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 52457 0.69 0.482645
Target:  5'- cGCGCGCgaGCGgcgUCUUGCGGAGGAg -3'
miRNA:   3'- cCGCGCGggCGUag-AGGAUGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 8997 0.67 0.609388
Target:  5'- cGC-CGCgCGCAUCUUCUGCGcGAc-- -3'
miRNA:   3'- cCGcGCGgGCGUAGAGGAUGC-CUuuu -5'
24095 5' -56.5 NC_005262.1 + 45294 0.67 0.620264
Target:  5'- uGCGCGCUCGg--CUUCUguACGGAAAGc -3'
miRNA:   3'- cCGCGCGGGCguaGAGGA--UGCCUUUU- -5'
24095 5' -56.5 NC_005262.1 + 43214 0.66 0.685395
Target:  5'- cGGCGCGCCgCGCG-CUgCUcgcCGGGc-- -3'
miRNA:   3'- -CCGCGCGG-GCGUaGAgGAu--GCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 57569 0.66 0.685395
Target:  5'- cGGCGgGCUucaGCAUCUCg-GCGGGc-- -3'
miRNA:   3'- -CCGCgCGGg--CGUAGAGgaUGCCUuuu -5'
24095 5' -56.5 NC_005262.1 + 51148 0.66 0.652915
Target:  5'- cGCGCGCCgCGCGcgcuUCUUCUucACGGu--- -3'
miRNA:   3'- cCGCGCGG-GCGU----AGAGGA--UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 51056 0.66 0.652915
Target:  5'- aGGCGCaGCCacugaccgaugaCGCGgugCUCCgGCGGGAc- -3'
miRNA:   3'- -CCGCG-CGG------------GCGUa--GAGGaUGCCUUuu -5'
24095 5' -56.5 NC_005262.1 + 5592 0.66 0.652915
Target:  5'- gGGCG-GCgCCGC-UCUCCgcaggcgacGCGGAAAc -3'
miRNA:   3'- -CCGCgCG-GGCGuAGAGGa--------UGCCUUUu -5'
24095 5' -56.5 NC_005262.1 + 31041 0.66 0.642037
Target:  5'- cGGCGaucaGCaCCGCGUCgCUcACGGAGu- -3'
miRNA:   3'- -CCGCg---CG-GGCGUAGaGGaUGCCUUuu -5'
24095 5' -56.5 NC_005262.1 + 2189 0.66 0.642037
Target:  5'- aGGCGCGCgCGCuUCUgCU-CGGucGAg -3'
miRNA:   3'- -CCGCGCGgGCGuAGAgGAuGCCuuUU- -5'
24095 5' -56.5 NC_005262.1 + 46475 0.67 0.620264
Target:  5'- -aCGCGCUCGCG-CUCCUuGCGGu--- -3'
miRNA:   3'- ccGCGCGGGCGUaGAGGA-UGCCuuuu -5'
24095 5' -56.5 NC_005262.1 + 37178 0.69 0.472606
Target:  5'- gGGCGCuucgauuuGCCCGCGgg-CUUGCGGAc-- -3'
miRNA:   3'- -CCGCG--------CGGGCGUagaGGAUGCCUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.