miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24096 5' -60.8 NC_005262.1 + 22118 0.69 0.312596
Target:  5'- cUGCUGCACGugGcCGgcaaucgucuggccGCCGCGgcugCCCg- -3'
miRNA:   3'- -ACGACGUGCugU-GC--------------CGGCGCa---GGGac -5'
24096 5' -60.8 NC_005262.1 + 22212 0.66 0.44073
Target:  5'- gGCUcGCGCucgacaagcuCACGGCCGCGccgCCCa- -3'
miRNA:   3'- aCGA-CGUGcu--------GUGCCGGCGCa--GGGac -5'
24096 5' -60.8 NC_005262.1 + 24470 0.72 0.182297
Target:  5'- cGCUGCACGGCACGagcgucgcgcuuGCCGCGaUCgCa- -3'
miRNA:   3'- aCGACGUGCUGUGC------------CGGCGC-AGgGac -5'
24096 5' -60.8 NC_005262.1 + 24823 0.66 0.478846
Target:  5'- aGCU-CGCGAuCGCGGCCgGCG-CCgUGc -3'
miRNA:   3'- aCGAcGUGCU-GUGCCGG-CGCaGGgAC- -5'
24096 5' -60.8 NC_005262.1 + 25461 0.69 0.314817
Target:  5'- cGCUGCGCGAgGCGauGCCGC-UCgCCa- -3'
miRNA:   3'- aCGACGUGCUgUGC--CGGCGcAG-GGac -5'
24096 5' -60.8 NC_005262.1 + 26275 0.67 0.404398
Target:  5'- cUGCcGCACGACGCGGaCCacguGCGUCa--- -3'
miRNA:   3'- -ACGaCGUGCUGUGCC-GG----CGCAGggac -5'
24096 5' -60.8 NC_005262.1 + 27192 0.74 0.132977
Target:  5'- gUGCUGUGUGGCAcuauCGGCCGCGUUCCg- -3'
miRNA:   3'- -ACGACGUGCUGU----GCCGGCGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 29775 0.69 0.300234
Target:  5'- cGCggcGCACGAUGCGGCCcgGCGUCacgCCg- -3'
miRNA:   3'- aCGa--CGUGCUGUGCCGG--CGCAG---GGac -5'
24096 5' -60.8 NC_005262.1 + 33341 0.68 0.353588
Target:  5'- cGCUGCGCGGCAcCGuGCCGCcgaucgacaaCCCg- -3'
miRNA:   3'- aCGACGUGCUGU-GC-CGGCGca--------GGGac -5'
24096 5' -60.8 NC_005262.1 + 34313 0.7 0.279346
Target:  5'- cGCga-ACGGCACGGUCGCcG-CCCUGc -3'
miRNA:   3'- aCGacgUGCUGUGCCGGCG-CaGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 34998 0.69 0.307459
Target:  5'- aUGCgcggGCGCGAgguCACGGUCGaCGUCCa-- -3'
miRNA:   3'- -ACGa---CGUGCU---GUGCCGGC-GCAGGgac -5'
24096 5' -60.8 NC_005262.1 + 36120 0.7 0.279346
Target:  5'- cGCUGCGCGAUACGGCgagGCGagcaCCg- -3'
miRNA:   3'- aCGACGUGCUGUGCCGg--CGCag--GGac -5'
24096 5' -60.8 NC_005262.1 + 38800 0.68 0.361736
Target:  5'- cGCUGCACGGCGCGagcaacggauacGCUGacCGUCUCg- -3'
miRNA:   3'- aCGACGUGCUGUGC------------CGGC--GCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 38851 0.67 0.413303
Target:  5'- aGCUGgGCGcgccGCGCGGCCauguGCGcaUCCCg- -3'
miRNA:   3'- aCGACgUGC----UGUGCCGG----CGC--AGGGac -5'
24096 5' -60.8 NC_005262.1 + 38963 0.68 0.370014
Target:  5'- gGUgaucgGCACGGCGcCGGCCGCGaUCgCg- -3'
miRNA:   3'- aCGa----CGUGCUGU-GCCGGCGC-AGgGac -5'
24096 5' -60.8 NC_005262.1 + 41123 0.66 0.4501
Target:  5'- cGuCUGCGC-ACugGuCCGCG-CCCUGa -3'
miRNA:   3'- aC-GACGUGcUGugCcGGCGCaGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 41569 0.72 0.191948
Target:  5'- gGCgUGgGCGGCGCGGCCGUGagCUUGu -3'
miRNA:   3'- aCG-ACgUGCUGUGCCGGCGCagGGAC- -5'
24096 5' -60.8 NC_005262.1 + 41924 0.68 0.370014
Target:  5'- gGCUGCGCGgu-CGGCUucaGCGccgaUCCCUGc -3'
miRNA:   3'- aCGACGUGCuguGCCGG---CGC----AGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 42116 0.66 0.468198
Target:  5'- aGCaGCGCGGCGCcGCCGCucagguugcgcguGUCCUUc -3'
miRNA:   3'- aCGaCGUGCUGUGcCGGCG-------------CAGGGAc -5'
24096 5' -60.8 NC_005262.1 + 42625 0.68 0.370014
Target:  5'- cGCUGCcgaACGGCAugaUGGCCGCcUUCCg- -3'
miRNA:   3'- aCGACG---UGCUGU---GCCGGCGcAGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.