miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24096 5' -60.8 NC_005262.1 + 470 0.66 0.478846
Target:  5'- cGUUGaccucgGCGACGCGGCgCGCGUguUCCa- -3'
miRNA:   3'- aCGACg-----UGCUGUGCCG-GCGCA--GGGac -5'
24096 5' -60.8 NC_005262.1 + 2161 0.69 0.300234
Target:  5'- aGCgcaucaGCGCGGCuauugucggACGGCUGCGUCUCg- -3'
miRNA:   3'- aCGa-----CGUGCUG---------UGCCGGCGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 2653 0.75 0.110195
Target:  5'- aUGcCUGCGCGGCGCcgGGCgGCGUCCUg- -3'
miRNA:   3'- -AC-GACGUGCUGUG--CCGgCGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 2760 0.66 0.478846
Target:  5'- cGCUucaGCACGGCgGCGgguGCCGCaUCCUUGu -3'
miRNA:   3'- aCGA---CGUGCUG-UGC---CGGCGcAGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 3297 0.72 0.19694
Target:  5'- gGcCUGCGCcGCGCGGCCcgGCGUcucgCCCUGa -3'
miRNA:   3'- aC-GACGUGcUGUGCCGG--CGCA----GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 5187 0.67 0.412408
Target:  5'- cGCggGCGCgGGCGCGGCCggcgcgaccgaggGCGUaUCCUGc -3'
miRNA:   3'- aCGa-CGUG-CUGUGCCGG-------------CGCA-GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 10083 0.68 0.361736
Target:  5'- aGCgccacgGCcuuCGACGCGGCCGgGUUCUg- -3'
miRNA:   3'- aCGa-----CGu--GCUGUGCCGGCgCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 10474 0.68 0.337684
Target:  5'- aGCgGCGCG-CGCGGUCGCucgCCUUGu -3'
miRNA:   3'- aCGaCGUGCuGUGCCGGCGca-GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 10711 0.74 0.140245
Target:  5'- gGCcGCGCGcACGCGGCCGgCGcUCCCg- -3'
miRNA:   3'- aCGaCGUGC-UGUGCCGGC-GC-AGGGac -5'
24096 5' -60.8 NC_005262.1 + 11436 0.74 0.144014
Target:  5'- aGgUGCGCGACAC-GCCGCG-CCCg- -3'
miRNA:   3'- aCgACGUGCUGUGcCGGCGCaGGGac -5'
24096 5' -60.8 NC_005262.1 + 11475 0.71 0.229316
Target:  5'- cGCUcGCGCGcgaGCACaugGGCCGCGUCgCCg- -3'
miRNA:   3'- aCGA-CGUGC---UGUG---CCGGCGCAG-GGac -5'
24096 5' -60.8 NC_005262.1 + 12653 0.68 0.361736
Target:  5'- aGaaGCGCG-CGCGGCgCGCGgcgaaCCCUGc -3'
miRNA:   3'- aCgaCGUGCuGUGCCG-GCGCa----GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 13362 0.69 0.29314
Target:  5'- cGCgGCACGACgACGuGCaCGCGgCCCUc -3'
miRNA:   3'- aCGaCGUGCUG-UGC-CG-GCGCaGGGAc -5'
24096 5' -60.8 NC_005262.1 + 13524 0.68 0.32993
Target:  5'- gGCUcgGC-CGGCGCGGgCGCG-CCCUc -3'
miRNA:   3'- aCGA--CGuGCUGUGCCgGCGCaGGGAc -5'
24096 5' -60.8 NC_005262.1 + 14635 0.68 0.32993
Target:  5'- cGCUGCGgcCGAUGCGGCCuGCacgCCCa- -3'
miRNA:   3'- aCGACGU--GCUGUGCCGG-CGca-GGGac -5'
24096 5' -60.8 NC_005262.1 + 16055 0.67 0.413303
Target:  5'- cGCUacCGCGACuuGCGGCCGaCGaUCCUGa -3'
miRNA:   3'- aCGAc-GUGCUG--UGCCGGC-GCaGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 17695 0.68 0.370014
Target:  5'- gUGCUucagguaCGCGGCGCGGCCGuCcUCCCa- -3'
miRNA:   3'- -ACGAc------GUGCUGUGCCGGC-GcAGGGac -5'
24096 5' -60.8 NC_005262.1 + 17793 0.7 0.262194
Target:  5'- cGCcuUGCGCGugcaggaacgcgaacACGCGGCUGuCGUCCCa- -3'
miRNA:   3'- aCG--ACGUGC---------------UGUGCCGGC-GCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 19060 0.67 0.404398
Target:  5'- uUGCgagGCccuUGACGCcGCCGCGcUCCUUGa -3'
miRNA:   3'- -ACGa--CGu--GCUGUGcCGGCGC-AGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 19967 0.72 0.207263
Target:  5'- cGC-GCGCGGCcggcccGCGGCCGUGUCgCCg- -3'
miRNA:   3'- aCGaCGUGCUG------UGCCGGCGCAG-GGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.