Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24096 | 5' | -60.8 | NC_005262.1 | + | 58411 | 1.07 | 0.00049 |
Target: 5'- gUGCUGCACGACACGGCCGCGUCCCUGc -3' miRNA: 3'- -ACGACGUGCUGUGCCGGCGCAGGGAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 2653 | 0.75 | 0.110195 |
Target: 5'- aUGcCUGCGCGGCGCcgGGCgGCGUCCUg- -3' miRNA: 3'- -AC-GACGUGCUGUG--CCGgCGCAGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 27192 | 0.74 | 0.132977 |
Target: 5'- gUGCUGUGUGGCAcuauCGGCCGCGUUCCg- -3' miRNA: 3'- -ACGACGUGCUGU----GCCGGCGCAGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 10711 | 0.74 | 0.140245 |
Target: 5'- gGCcGCGCGcACGCGGCCGgCGcUCCCg- -3' miRNA: 3'- aCGaCGUGC-UGUGCCGGC-GC-AGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 11436 | 0.74 | 0.144014 |
Target: 5'- aGgUGCGCGACAC-GCCGCG-CCCg- -3' miRNA: 3'- aCgACGUGCUGUGcCGGCGCaGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 63626 | 0.73 | 0.173078 |
Target: 5'- cUGCUGUACGACAUGGCaaaaaGCauGUCgCUGu -3' miRNA: 3'- -ACGACGUGCUGUGCCGg----CG--CAGgGAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 24470 | 0.72 | 0.182297 |
Target: 5'- cGCUGCACGGCACGagcgucgcgcuuGCCGCGaUCgCa- -3' miRNA: 3'- aCGACGUGCUGUGC------------CGGCGC-AGgGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 43815 | 0.72 | 0.191948 |
Target: 5'- gGCgaucGCgGCGACACGGCCGCGggCCg- -3' miRNA: 3'- aCGa---CG-UGCUGUGCCGGCGCagGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 41569 | 0.72 | 0.191948 |
Target: 5'- gGCgUGgGCGGCGCGGCCGUGagCUUGu -3' miRNA: 3'- aCG-ACgUGCUGUGCCGGCGCagGGAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 3297 | 0.72 | 0.19694 |
Target: 5'- gGcCUGCGCcGCGCGGCCcgGCGUcucgCCCUGa -3' miRNA: 3'- aC-GACGUGcUGUGCCGG--CGCA----GGGAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 19967 | 0.72 | 0.207263 |
Target: 5'- cGC-GCGCGGCcggcccGCGGCCGUGUCgCCg- -3' miRNA: 3'- aCGaCGUGCUG------UGCCGGCGCAG-GGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 58903 | 0.71 | 0.218051 |
Target: 5'- cGCUGCGCGAUcaGGCCGgCGgCCCg- -3' miRNA: 3'- aCGACGUGCUGugCCGGC-GCaGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 62367 | 0.71 | 0.229316 |
Target: 5'- cGCUGCGCucGACgaaGCGGCCGCGgUCgUGg -3' miRNA: 3'- aCGACGUG--CUG---UGCCGGCGCaGGgAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 11475 | 0.71 | 0.229316 |
Target: 5'- cGCUcGCGCGcgaGCACaugGGCCGCGUCgCCg- -3' miRNA: 3'- aCGA-CGUGC---UGUG---CCGGCGCAG-GGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 46537 | 0.7 | 0.259632 |
Target: 5'- aGCccaGCGCGGCGcCGGCCGcCGcUCCCg- -3' miRNA: 3'- aCGa--CGUGCUGU-GCCGGC-GC-AGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 17793 | 0.7 | 0.262194 |
Target: 5'- cGCcuUGCGCGugcaggaacgcgaacACGCGGCUGuCGUCCCa- -3' miRNA: 3'- aCG--ACGUGC---------------UGUGCCGGC-GCAGGGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 36120 | 0.7 | 0.279346 |
Target: 5'- cGCUGCGCGAUACGGCgagGCGagcaCCg- -3' miRNA: 3'- aCGACGUGCUGUGCCGg--CGCag--GGac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 34313 | 0.7 | 0.279346 |
Target: 5'- cGCga-ACGGCACGGUCGCcG-CCCUGc -3' miRNA: 3'- aCGacgUGCUGUGCCGGCG-CaGGGAC- -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 53246 | 0.69 | 0.286178 |
Target: 5'- gGCUGCgcGCGGC-CGGUCGCGUCg--- -3' miRNA: 3'- aCGACG--UGCUGuGCCGGCGCAGggac -5' |
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24096 | 5' | -60.8 | NC_005262.1 | + | 13362 | 0.69 | 0.29314 |
Target: 5'- cGCgGCACGACgACGuGCaCGCGgCCCUc -3' miRNA: 3'- aCGaCGUGCUG-UGC-CG-GCGCaGGGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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