miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24096 5' -60.8 NC_005262.1 + 42625 0.68 0.370014
Target:  5'- cGCUGCcgaACGGCAugaUGGCCGCcUUCCg- -3'
miRNA:   3'- aCGACG---UGCUGU---GCCGGCGcAGGGac -5'
24096 5' -60.8 NC_005262.1 + 2161 0.69 0.300234
Target:  5'- aGCgcaucaGCGCGGCuauugucggACGGCUGCGUCUCg- -3'
miRNA:   3'- aCGa-----CGUGCUG---------UGCCGGCGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 22118 0.69 0.312596
Target:  5'- cUGCUGCACGugGcCGgcaaucgucuggccGCCGCGgcugCCCg- -3'
miRNA:   3'- -ACGACGUGCugU-GC--------------CGGCGCa---GGGac -5'
24096 5' -60.8 NC_005262.1 + 50158 0.69 0.314817
Target:  5'- aGCUGCGCGAC-CGcCUGCGcuaCCUGa -3'
miRNA:   3'- aCGACGUGCUGuGCcGGCGCag-GGAC- -5'
24096 5' -60.8 NC_005262.1 + 55642 0.69 0.314817
Target:  5'- gGCcGCGCGcuCGUGGCCGCGUCCg-- -3'
miRNA:   3'- aCGaCGUGCu-GUGCCGGCGCAGGgac -5'
24096 5' -60.8 NC_005262.1 + 25461 0.69 0.314817
Target:  5'- cGCUGCGCGAgGCGauGCCGC-UCgCCa- -3'
miRNA:   3'- aCGACGUGCUgUGC--CGGCGcAG-GGac -5'
24096 5' -60.8 NC_005262.1 + 33341 0.68 0.353588
Target:  5'- cGCUGCGCGGCAcCGuGCCGCcgaucgacaaCCCg- -3'
miRNA:   3'- aCGACGUGCUGU-GC-CGGCGca--------GGGac -5'
24096 5' -60.8 NC_005262.1 + 12653 0.68 0.361736
Target:  5'- aGaaGCGCG-CGCGGCgCGCGgcgaaCCCUGc -3'
miRNA:   3'- aCgaCGUGCuGUGCCG-GCGCa----GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 38800 0.68 0.361736
Target:  5'- cGCUGCACGGCGCGagcaacggauacGCUGacCGUCUCg- -3'
miRNA:   3'- aCGACGUGCUGUGC------------CGGC--GCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 36120 0.7 0.279346
Target:  5'- cGCUGCGCGAUACGGCgagGCGagcaCCg- -3'
miRNA:   3'- aCGACGUGCUGUGCCGg--CGCag--GGac -5'
24096 5' -60.8 NC_005262.1 + 34313 0.7 0.279346
Target:  5'- cGCga-ACGGCACGGUCGCcG-CCCUGc -3'
miRNA:   3'- aCGacgUGCUGUGCCGGCG-CaGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 46537 0.7 0.259632
Target:  5'- aGCccaGCGCGGCGcCGGCCGcCGcUCCCg- -3'
miRNA:   3'- aCGa--CGUGCUGU-GCCGGC-GC-AGGGac -5'
24096 5' -60.8 NC_005262.1 + 2653 0.75 0.110195
Target:  5'- aUGcCUGCGCGGCGCcgGGCgGCGUCCUg- -3'
miRNA:   3'- -AC-GACGUGCUGUG--CCGgCGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 27192 0.74 0.132977
Target:  5'- gUGCUGUGUGGCAcuauCGGCCGCGUUCCg- -3'
miRNA:   3'- -ACGACGUGCUGU----GCCGGCGCAGGGac -5'
24096 5' -60.8 NC_005262.1 + 10711 0.74 0.140245
Target:  5'- gGCcGCGCGcACGCGGCCGgCGcUCCCg- -3'
miRNA:   3'- aCGaCGUGC-UGUGCCGGC-GC-AGGGac -5'
24096 5' -60.8 NC_005262.1 + 11436 0.74 0.144014
Target:  5'- aGgUGCGCGACAC-GCCGCG-CCCg- -3'
miRNA:   3'- aCgACGUGCUGUGcCGGCGCaGGGac -5'
24096 5' -60.8 NC_005262.1 + 24470 0.72 0.182297
Target:  5'- cGCUGCACGGCACGagcgucgcgcuuGCCGCGaUCgCa- -3'
miRNA:   3'- aCGACGUGCUGUGC------------CGGCGC-AGgGac -5'
24096 5' -60.8 NC_005262.1 + 43815 0.72 0.191948
Target:  5'- gGCgaucGCgGCGACACGGCCGCGggCCg- -3'
miRNA:   3'- aCGa---CG-UGCUGUGCCGGCGCagGGac -5'
24096 5' -60.8 NC_005262.1 + 58903 0.71 0.218051
Target:  5'- cGCUGCGCGAUcaGGCCGgCGgCCCg- -3'
miRNA:   3'- aCGACGUGCUGugCCGGC-GCaGGGac -5'
24096 5' -60.8 NC_005262.1 + 11475 0.71 0.229316
Target:  5'- cGCUcGCGCGcgaGCACaugGGCCGCGUCgCCg- -3'
miRNA:   3'- aCGA-CGUGC---UGUG---CCGGCGCAG-GGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.