miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 3' -62.9 NC_005262.1 + 23061 0.66 0.378592
Target:  5'- -aCGCGCCgccgCCCGUGCucgagggCGUCaGCGCc- -3'
miRNA:   3'- gaGUGCGGa---GGGCGCG-------GCAG-CGCGaa -5'
24098 3' -62.9 NC_005262.1 + 28234 0.75 0.090466
Target:  5'- uUCGCGCUcuuUCCCGCGCCGgcgagcgacaUCGCgGCUUg -3'
miRNA:   3'- gAGUGCGG---AGGGCGCGGC----------AGCG-CGAA- -5'
24098 3' -62.9 NC_005262.1 + 28807 0.67 0.294823
Target:  5'- cCUCGCGCCcgcgcaUCUCGaGCucgCGUCGCGCUc -3'
miRNA:   3'- -GAGUGCGG------AGGGCgCG---GCAGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 29289 0.66 0.379431
Target:  5'- -cCGCGUCgucucgcagaagUCgCGCGCCGcCGCGCg- -3'
miRNA:   3'- gaGUGCGG------------AGgGCGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 29660 0.71 0.179752
Target:  5'- -gCAUGCCgCCCGCGCC--CGCGCa- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGGcaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 29798 0.67 0.323787
Target:  5'- gUCACGCCgUCCGCGCCcauGUUaCGCa- -3'
miRNA:   3'- gAGUGCGGaGGGCGCGG---CAGcGCGaa -5'
24098 3' -62.9 NC_005262.1 + 34149 0.68 0.287905
Target:  5'- -cUACGUCUaCCCGCcgGCCGUCGCcgGCa- -3'
miRNA:   3'- gaGUGCGGA-GGGCG--CGGCAGCG--CGaa -5'
24098 3' -62.9 NC_005262.1 + 35215 0.68 0.267918
Target:  5'- aUCACGCCguaggGCauGCCGUCGCGCg- -3'
miRNA:   3'- gAGUGCGGaggg-CG--CGGCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 40220 0.69 0.243031
Target:  5'- uUCACGgcgaUCUCCUGCGCCcG-CGCGCg- -3'
miRNA:   3'- gAGUGC----GGAGGGCGCGG-CaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 40559 0.73 0.116421
Target:  5'- -aCGCGCCgggcaacaccggcggUgCCGCGaCCGUCGCGCUg -3'
miRNA:   3'- gaGUGCGG---------------AgGGCGC-GGCAGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 40854 0.72 0.14121
Target:  5'- aUCACGCCUCCCucgcgcggagcaugGCGUCGgcgagCGCGUa- -3'
miRNA:   3'- gAGUGCGGAGGG--------------CGCGGCa----GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 41958 0.67 0.323787
Target:  5'- -cCGCGCCUUgugCCGCGCCuGUUGC-CUg -3'
miRNA:   3'- gaGUGCGGAG---GGCGCGG-CAGCGcGAa -5'
24098 3' -62.9 NC_005262.1 + 42161 0.7 0.209339
Target:  5'- aUCugGCCgUCgCCGuCGCCGUCGCaCUc -3'
miRNA:   3'- gAGugCGG-AG-GGC-GCGGCAGCGcGAa -5'
24098 3' -62.9 NC_005262.1 + 46003 0.67 0.309046
Target:  5'- uUCGCGuuCCUgCaCGCGCaaggCGUCGCGCUg -3'
miRNA:   3'- gAGUGC--GGAgG-GCGCG----GCAGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 46230 0.68 0.274453
Target:  5'- cCUCG-GCUUCgCGCGCCGcCGCgGCUg -3'
miRNA:   3'- -GAGUgCGGAGgGCGCGGCaGCG-CGAa -5'
24098 3' -62.9 NC_005262.1 + 46304 0.66 0.346867
Target:  5'- aUCgACGCgUCgCGCGCgGcgCGCGCUUc -3'
miRNA:   3'- gAG-UGCGgAGgGCGCGgCa-GCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 46444 0.72 0.131523
Target:  5'- -cCGCGCCgCCCGCGCCGgacccgaaugcCGCGCc- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGGCa----------GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 46731 0.73 0.118295
Target:  5'- -gCGCGCCUaUCgGCGCCGUgCGCGCg- -3'
miRNA:   3'- gaGUGCGGA-GGgCGCGGCA-GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 48068 0.65 0.385336
Target:  5'- gUCGCaccugccgcgacgaGCCgCCCgGCGCCGaCGCGCg- -3'
miRNA:   3'- gAGUG--------------CGGaGGG-CGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 48205 0.69 0.220098
Target:  5'- -gCACGCgCUCCuCGCGCgCG-CGCGCc- -3'
miRNA:   3'- gaGUGCG-GAGG-GCGCG-GCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.