miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 3' -62.9 NC_005262.1 + 3283 0.67 0.309046
Target:  5'- gUCACGCUcuuggcggCCUGCGCCG-CGCGg-- -3'
miRNA:   3'- gAGUGCGGa-------GGGCGCGGCaGCGCgaa -5'
24098 3' -62.9 NC_005262.1 + 3721 0.66 0.3711
Target:  5'- gUCAgCGCgUCgCGCGCggCGUUGCGCa- -3'
miRNA:   3'- gAGU-GCGgAGgGCGCG--GCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 4249 0.66 0.379431
Target:  5'- cCUCGCGCUcCUCGUgGCCcauugCGCGCUUg -3'
miRNA:   3'- -GAGUGCGGaGGGCG-CGGca---GCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 5783 0.7 0.204131
Target:  5'- -aCAgGCCaUCuuGCGCCG-CGCGCa- -3'
miRNA:   3'- gaGUgCGG-AGggCGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 6173 0.75 0.092942
Target:  5'- gUCACGCgCUCCUGCGCC-UCGCGg-- -3'
miRNA:   3'- gAGUGCG-GAGGGCGCGGcAGCGCgaa -5'
24098 3' -62.9 NC_005262.1 + 8771 0.68 0.287905
Target:  5'- --aACGUCUugCCCGCGCCGaccgCGUGCg- -3'
miRNA:   3'- gagUGCGGA--GGGCGCGGCa---GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 10335 0.71 0.166395
Target:  5'- uUCACGCCguugUCCuCGaCGCCGgcgcCGCGCUUc -3'
miRNA:   3'- gAGUGCGG----AGG-GC-GCGGCa---GCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 10969 0.66 0.379431
Target:  5'- uUCGCGCUgucggCGCGCCGggaacgccggUCGCGCUc -3'
miRNA:   3'- gAGUGCGGagg--GCGCGGC----------AGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 11445 0.71 0.175197
Target:  5'- -aCACGCCgcgCCCGCGCa-UCGUGCc- -3'
miRNA:   3'- gaGUGCGGa--GGGCGCGgcAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 11938 0.68 0.255226
Target:  5'- gCUCGCGUCgUUCGCGgCGcCGCGCUUc -3'
miRNA:   3'- -GAGUGCGGaGGGCGCgGCaGCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 13387 0.66 0.354817
Target:  5'- cCUCGCGCUccgcggcgcugaUCgCCGCGCgGuUCGCGUc- -3'
miRNA:   3'- -GAGUGCGG------------AG-GGCGCGgC-AGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 13468 0.73 0.124747
Target:  5'- --gGCGCgaagCCCGCGCgCGUCGCGCg- -3'
miRNA:   3'- gagUGCGga--GGGCGCG-GCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 13860 0.66 0.354817
Target:  5'- gUCACGCCaUCCGgGCCgGUCGUcagGCg- -3'
miRNA:   3'- gAGUGCGGaGGGCgCGG-CAGCG---CGaa -5'
24098 3' -62.9 NC_005262.1 + 15017 0.71 0.166395
Target:  5'- gCUCGCGCacgUCCUGCGCUGccauguUCGCGCc- -3'
miRNA:   3'- -GAGUGCGg--AGGGCGCGGC------AGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 15316 0.71 0.175197
Target:  5'- gUCGCGCCgCCCGUGCCcaCGCgGCUc -3'
miRNA:   3'- gAGUGCGGaGGGCGCGGcaGCG-CGAa -5'
24098 3' -62.9 NC_005262.1 + 19175 0.68 0.26151
Target:  5'- -cCAUGCCUUgCGCGCgGgcuucUCGCGCUc -3'
miRNA:   3'- gaGUGCGGAGgGCGCGgC-----AGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 19631 0.67 0.316352
Target:  5'- gCUCGcCGCCgcgcUCCUGC-CCGaUCGCGCg- -3'
miRNA:   3'- -GAGU-GCGG----AGGGCGcGGC-AGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 19939 0.68 0.274453
Target:  5'- aUCGCGCCgaggUCCUGCcggccaccGCCG-CGCGCg- -3'
miRNA:   3'- gAGUGCGG----AGGGCG--------CGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 21517 0.66 0.346867
Target:  5'- -aCACGUCgccggugCCCGUGCCGcUCGuCGCc- -3'
miRNA:   3'- gaGUGCGGa------GGGCGCGGC-AGC-GCGaa -5'
24098 3' -62.9 NC_005262.1 + 22364 0.66 0.362895
Target:  5'- -cCGCGCCgCCCGUGUUaGUCgGCGCa- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGG-CAG-CGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.