miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 3' -62.9 NC_005262.1 + 58988 1.04 0.000486
Target:  5'- cCUCACGCCUCCCGCGCCGUCGCGCUUc -3'
miRNA:   3'- -GAGUGCGGAGGGCGCGGCAGCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 48068 0.65 0.385336
Target:  5'- gUCGCaccugccgcgacgaGCCgCCCgGCGCCGaCGCGCg- -3'
miRNA:   3'- gAGUG--------------CGGaGGG-CGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 10969 0.66 0.379431
Target:  5'- uUCGCGCUgucggCGCGCCGggaacgccggUCGCGCUc -3'
miRNA:   3'- gAGUGCGGagg--GCGCGGC----------AGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 41958 0.67 0.323787
Target:  5'- -cCGCGCCUUgugCCGCGCCuGUUGC-CUg -3'
miRNA:   3'- gaGUGCGGAG---GGCGCGG-CAGCGcGAa -5'
24098 3' -62.9 NC_005262.1 + 46003 0.67 0.309046
Target:  5'- uUCGCGuuCCUgCaCGCGCaaggCGUCGCGCUg -3'
miRNA:   3'- gAGUGC--GGAgG-GCGCG----GCAGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 50087 0.67 0.309046
Target:  5'- --uGCGCCgaccgaaCCCGCGCCG-CGCGa-- -3'
miRNA:   3'- gagUGCGGa------GGGCGCGGCaGCGCgaa -5'
24098 3' -62.9 NC_005262.1 + 28807 0.67 0.294823
Target:  5'- cCUCGCGCCcgcgcaUCUCGaGCucgCGUCGCGCUc -3'
miRNA:   3'- -GAGUGCGG------AGGGCgCG---GCAGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 34149 0.68 0.287905
Target:  5'- -cUACGUCUaCCCGCcgGCCGUCGCcgGCa- -3'
miRNA:   3'- gaGUGCGGA-GGGCG--CGGCAGCG--CGaa -5'
24098 3' -62.9 NC_005262.1 + 5783 0.7 0.204131
Target:  5'- -aCAgGCCaUCuuGCGCCG-CGCGCa- -3'
miRNA:   3'- gaGUgCGG-AGggCGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 29660 0.71 0.179752
Target:  5'- -gCAUGCCgCCCGCGCC--CGCGCa- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGGcaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 6173 0.75 0.092942
Target:  5'- gUCACGCgCUCCUGCGCC-UCGCGg-- -3'
miRNA:   3'- gAGUGCG-GAGGGCGCGGcAGCGCgaa -5'
24098 3' -62.9 NC_005262.1 + 40559 0.73 0.116421
Target:  5'- -aCGCGCCgggcaacaccggcggUgCCGCGaCCGUCGCGCUg -3'
miRNA:   3'- gaGUGCGG---------------AgGGCGC-GGCAGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 13468 0.73 0.124747
Target:  5'- --gGCGCgaagCCCGCGCgCGUCGCGCg- -3'
miRNA:   3'- gagUGCGga--GGGCGCG-GCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 46444 0.72 0.131523
Target:  5'- -cCGCGCCgCCCGCGCCGgacccgaaugcCGCGCc- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGGCa----------GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 58867 0.71 0.175197
Target:  5'- gUCACGCCggcgcagCCCGCGCguuggcugcUGcCGCGCUg -3'
miRNA:   3'- gAGUGCGGa------GGGCGCG---------GCaGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 11445 0.71 0.175197
Target:  5'- -aCACGCCgcgCCCGCGCa-UCGUGCc- -3'
miRNA:   3'- gaGUGCGGa--GGGCGCGgcAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 28234 0.75 0.090466
Target:  5'- uUCGCGCUcuuUCCCGCGCCGgcgagcgacaUCGCgGCUUg -3'
miRNA:   3'- gAGUGCGG---AGGGCGCGGC----------AGCG-CGAA- -5'
24098 3' -62.9 NC_005262.1 + 4249 0.66 0.379431
Target:  5'- cCUCGCGCUcCUCGUgGCCcauugCGCGCUUg -3'
miRNA:   3'- -GAGUGCGGaGGGCG-CGGca---GCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 23061 0.66 0.378592
Target:  5'- -aCGCGCCgccgCCCGUGCucgagggCGUCaGCGCc- -3'
miRNA:   3'- gaGUGCGGa---GGGCGCG-------GCAG-CGCGaa -5'
24098 3' -62.9 NC_005262.1 + 59216 0.66 0.374417
Target:  5'- gCUCACGCCcgagcagcgCCgccgcuggcgcgagaUGCGCCG-CGCGCg- -3'
miRNA:   3'- -GAGUGCGGa--------GG---------------GCGCGGCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.