miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 3' -62.9 NC_005262.1 + 58988 1.04 0.000486
Target:  5'- cCUCACGCCUCCCGCGCCGUCGCGCUUc -3'
miRNA:   3'- -GAGUGCGGAGGGCGCGGCAGCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 28234 0.75 0.090466
Target:  5'- uUCGCGCUcuuUCCCGCGCCGgcgagcgacaUCGCgGCUUg -3'
miRNA:   3'- gAGUGCGG---AGGGCGCGGC----------AGCG-CGAA- -5'
24098 3' -62.9 NC_005262.1 + 6173 0.75 0.092942
Target:  5'- gUCACGCgCUCCUGCGCC-UCGCGg-- -3'
miRNA:   3'- gAGUGCG-GAGGGCGCGGcAGCGCgaa -5'
24098 3' -62.9 NC_005262.1 + 40559 0.73 0.116421
Target:  5'- -aCGCGCCgggcaacaccggcggUgCCGCGaCCGUCGCGCUg -3'
miRNA:   3'- gaGUGCGG---------------AgGGCGC-GGCAGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 46731 0.73 0.118295
Target:  5'- -gCGCGCCUaUCgGCGCCGUgCGCGCg- -3'
miRNA:   3'- gaGUGCGGA-GGgCGCGGCA-GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 13468 0.73 0.124747
Target:  5'- --gGCGCgaagCCCGCGCgCGUCGCGCg- -3'
miRNA:   3'- gagUGCGga--GGGCGCG-GCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 46444 0.72 0.131523
Target:  5'- -cCGCGCCgCCCGCGCCGgacccgaaugcCGCGCc- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGGCa----------GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 40854 0.72 0.14121
Target:  5'- aUCACGCCUCCCucgcgcggagcaugGCGUCGgcgagCGCGUa- -3'
miRNA:   3'- gAGUGCGGAGGG--------------CGCGGCa----GCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 15017 0.71 0.166395
Target:  5'- gCUCGCGCacgUCCUGCGCUGccauguUCGCGCc- -3'
miRNA:   3'- -GAGUGCGg--AGGGCGCGGC------AGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 10335 0.71 0.166395
Target:  5'- uUCACGCCguugUCCuCGaCGCCGgcgcCGCGCUUc -3'
miRNA:   3'- gAGUGCGG----AGG-GC-GCGGCa---GCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 58867 0.71 0.175197
Target:  5'- gUCACGCCggcgcagCCCGCGCguuggcugcUGcCGCGCUg -3'
miRNA:   3'- gAGUGCGGa------GGGCGCG---------GCaGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 11445 0.71 0.175197
Target:  5'- -aCACGCCgcgCCCGCGCa-UCGUGCc- -3'
miRNA:   3'- gaGUGCGGa--GGGCGCGgcAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 15316 0.71 0.175197
Target:  5'- gUCGCGCCgCCCGUGCCcaCGCgGCUc -3'
miRNA:   3'- gAGUGCGGaGGGCGCGGcaGCG-CGAa -5'
24098 3' -62.9 NC_005262.1 + 29660 0.71 0.179752
Target:  5'- -gCAUGCCgCCCGCGCC--CGCGCa- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGGcaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 58607 0.7 0.194053
Target:  5'- gUCGCGCCggCCGCGCC--CGCGCc- -3'
miRNA:   3'- gAGUGCGGagGGCGCGGcaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 5783 0.7 0.204131
Target:  5'- -aCAgGCCaUCuuGCGCCG-CGCGCa- -3'
miRNA:   3'- gaGUgCGG-AGggCGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 42161 0.7 0.209339
Target:  5'- aUCugGCCgUCgCCGuCGCCGUCGCaCUc -3'
miRNA:   3'- gAGugCGG-AG-GGC-GCGGCAGCGcGAa -5'
24098 3' -62.9 NC_005262.1 + 48205 0.69 0.220098
Target:  5'- -gCACGCgCUCCuCGCGCgCG-CGCGCc- -3'
miRNA:   3'- gaGUGCG-GAGG-GCGCG-GCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 40220 0.69 0.243031
Target:  5'- uUCACGgcgaUCUCCUGCGCCcG-CGCGCg- -3'
miRNA:   3'- gAGUGC----GGAGGGCGCGG-CaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 11938 0.68 0.255226
Target:  5'- gCUCGCGUCgUUCGCGgCGcCGCGCUUc -3'
miRNA:   3'- -GAGUGCGGaGGGCGCgGCaGCGCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.